Detail information of GWHGAAEX015629/evm.TU.scaffold_7.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|375146726|ref|YP_005009167.1|1.00E-11RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
KOGKOG01180FOG: RRM domain
nrgi|672183898|ref|XP_008812246.1|0PREDICTED: polyadenylate-binding protein RBP47B' [Phoenix dactylifera]
Swissprottr|Q8VXZ9|R47BP_ARATH0Polyadenylate-binding protein RBP47B'
trEMBLtr|D7SL59|D7SL59_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI16387.3}
TAIRAT5G193500RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000005366646395498+
Transcript Sequence

Network for GWHGAAEX015629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1591273.20E-13
PF00076.21RRM_11512163.20E-16
PF00076.21RRM_12693314.00E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms62.110
SRR2545915Juvenile tuber55.480
SRP108465SRR5643513five period of Gastrodia elata30.570
SRR5643514five period of Gastrodia elata27.200
SRR5643515five period of Gastrodia elata25.120
SRR5643524five period of Gastrodia elata24.970
SRR5643525five period of Gastrodia elata23.290
SRR5643528five period of Gastrodia elata20.490
SRR5643658five period of Gastrodia elata26.820
SRR5643659five period of Gastrodia elata31.900
SRR5643660five period of Gastrodia elata35.870
SRR5643661five period of Gastrodia elata30.790
SRR5643662five period of Gastrodia elata30.560
SRR5643663five period of Gastrodia elata34.330
SRR5643664five period of Gastrodia elata32.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_140.400
SRR6049655Rhizomagastrodiae_C368-T10_good_146.290
SRR6049656Rhizomagastrodiae_C368-T07_good_135.920
SRR6049657Rhizomagastrodiae_C368-T07_good_144.100
SRR6049658Rhizomagastrodiae_C368-T04_good_142.010
SRR6049659Rhizomagastrodiae_C368-T04_good_144.120
SRR6049660Rhizomagastrodiae_C368-T01_good_143.700
SRR6049661Rhizomagastrodiae_C368-T04_good_137.660
SRR6049662Rhizomagastrodiae_C368-T01_good_135.830
SRR6049663Rhizomagastrodiae_C368-T01_good_138.960
SRR6049664Rhizomagastrodiae_C368-T10_good_139.510
SRR6049665Rhizomagastrodiae_C368-T10_good_139.510
SRP279888GastroGastrodia elata tuber 42.41
JuvenJuvenile tuber54.81
Mother_GastroMother tuber of Gastrodia elata 22.07
Mother_JuvenMother tuber of Juvenile 31.45