Gene detail

Detail information of GWHGAAEX015632/evm.TU.scaffold_7.12

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0167	1.00E-71	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|743838137\|ref\|XP_010936614.1\|	9.97E-139	PREDICTED: U-box domain-containing protein 4 [Elaeis guineensis]
Swissprot	tr\|O22193\|PUB4_ARATH	1.00E-68	U-box domain-containing protein 4
trEMBL	tr\|M0SMX2\|M0SMX2_MUSAM	9.00E-139	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P11070_001}
TAIR	AT3G01400	1.00E-71	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	582450	587727	+

Transcript Sequence
>GWHTAAEX015632 GCAAAATAAACCACCATGCCTGGCGATGAAATGCAATACAGCTACGTCAGCCTGAAAAAGCCGAAGATAGATACCAAAATTAAAGGAATGCTTCGTTCAGGACTAAAAAAGATACCGCATGCAGCAGTTATTTCAAAAATTGCGAACAAGTGCACGATTGGTCTCTGTGTCGTCAAGAAATATGCCGAAAAGCCCATCCGACCATTTCCAATGGGTCAAACTTCTCCATAACGGCGGCTGCCTCTATTTCTCCGCCCAAACCACGACCGGCTTGCAGTCAATCATCTATTGCTATCCATTGGCGCGGCTCTACGAGCTGTATCTGCATGTATTTCACAGATTCCCCATAAGATTTTCCTTGAAAATCCATTTCTTTTCCTCTGACCAACTCTTCTCTGGTAATTTTTCCAAAAATGAAGCTTCTCCTAGAGAGCGATGTTCTTAATGTCTGATTCTTGAATCCTGCTCTCTTGCATCGGCTGAGCGTAATAAAAAGCTTCGGGAGGGTCTCATATCCGTTCCATGCGGACGATTAGACCGAGTTTGAGCTCCACAAATCAGTATTCGGACCCGATCCACCCGGACGCTGTGTCTGATAATTCGACGGATTCCGTGGCTGATTTCAGGTTCCAAGAGCTTGATGACGAATTTATTATCTCCGCAGCCGCGAAATCTCTCTCACCGGATTCCTCAAACAAACTGTTGGAACTCTCACAGGATAACTCAGATTTTTGTAGCTTCAATTCCGACGTCTCGAGCGAGCTCCAGCGTCTGGCGTCGTCCTTGAACGTCAAGGCTTCTAGTGCAGATCGTGTGAAAAAGGGAACCAACGAAATAGGGTTAGGGCTACCCCCGAACGTGACCACCGAAATCCTCGAAATCGTAAAACCGTTGGTGAAATTGTGTGTGGAGATACTAGGGTCGTCCTCCGCGCCGCCTGAGGGAAAACGCGGCGCTGTGGGCAAGCTCCGTCTTCTAGCCAAGAATCGATCCGATTTCCGGGAAATAATTGGTGAATCCGGGGCGATACAAAGCCTTATACCCTTTCTGCGCAGTTCGGATCCGAGGACACAGGAGAACGCCGTCACCGCAGTCCTCAATCTCTCCCTGGAAGAGTCAAACAAACGGCACATTACTGCAGCCGGAGCCATAACGCCTCTGGTTTATGCCCTGAGTGCTGGAACGGCGATCGCGAAGCAGAACGCGGCGCTGGCGCTGCTGAACCTGTCGATGATTGAAGATAATCAGAACACGATTGGGGTATGCGGAGCCATTCCCCCGCTGGTTGCGCTTCTGGTGAATGGGTCCAGCAGAGGAAAAAAGGATGCCCTGACGACGCTTTACAAGTTGTGTAGTAACCCTCATAACAAGGAGCGGGCTGTGAGCGCGGGGGCCGTGACGCCGCTTGTGGCTTTGGTGGCCGATGGTGAGGACGGCACGGCAGAGAAGGCGATGGTGGTTTTGAGCGTTTTGTCGGAGATAGAGGCTGGAAGGGAGGCCATTGTTGAGGAAGGCGGGATTCCCGCGCTTCTCGAGGCTATAGAGGACGGTCCTGCCACGGGGGCGGAGTTTGCTCTCATTACGTTGCTTCAGCTATGCTCCGATTCTGAATGCAACCGAGGGATTCTAGTCAAGGAGGGAGCTATTCCACCGCTCGTCGCCCTCAGGCACTCTGCTTCCCACCGTCTTAAACACAAGGCGAATGCACTGTTAAAATACCTCCGACGAGACTCGCCGGCTCAAAAAGACTGTGCTCTCGAGATTTGCACCAAATAAACAGAACGGTCTATGCGCTGCAGGGCATCTCCATTGAAGGCTGCAACATTTGCTTCCGAGAGGGTTGATAATTCCGGATGTCTTGTTCGTGCATTGCCCCCATATCCACTGCTGCACCTAACACCAAGCGGAAATGTTTCATAGAAATTTTTTAAAATTTTTATTATGTAAATACATAAGAATTTTGTATATGAAATAATTAAATGTATAATTTCTATTCAAGTTTATAAAAATATATAAAATTTGACGACACTTGCCTGTCTAAGTATACTGCTTCATATGATACTTCCATATGTAGAAAAGGGAAGTCTTTTTTGGAAAGAAAGGAAGCTTCTTCTTTATTTAACTGTATGTGCTTTCTTTAATTTTGTTGGAAATCAGGTTCTGTGGTCATCAATAATCTTGATCTAATTAATTTTTATTTCTTATTATTTAAACCTTCAAAAGTAGTTAGCCTT

Network for GWHGAAEX015632

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.22	Arm	157	195	2.20E-07
PF00514.22	Arm	241	278	3.60E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.160
SRP064423	SRR2545915	Juvenile tuber	5.610
SRP108465	SRR5643513	five period of Gastrodia elata	6.230
	SRR5643514	five period of Gastrodia elata	5.350
	SRR5643515	five period of Gastrodia elata	10.320
	SRR5643524	five period of Gastrodia elata	5.610
	SRR5643525	five period of Gastrodia elata	3.230
	SRR5643528	five period of Gastrodia elata	12.350
	SRR5643658	five period of Gastrodia elata	2.620
	SRR5643659	five period of Gastrodia elata	22.550
	SRR5643660	five period of Gastrodia elata	9.240
	SRR5643661	five period of Gastrodia elata	14.470
	SRR5643662	five period of Gastrodia elata	35.430
	SRR5643663	five period of Gastrodia elata	18.770
	SRR5643664	five period of Gastrodia elata	53.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.300
SRP279888	Gastro	Gastrodia elata tuber	11.54
	Juven	Juvenile tuber	5.27
	Mother_Gastro	Mother tuber of Gastrodia elata	55.20
	Mother_Juven	Mother tuber of Juvenile	28.90