Detail information of GWHGAAEX015635/evm.TU.scaffold_7.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 1.00E-39 | two component regulator [Flavobacterium johnsoniae UW101] |
| KOG | KOG0619 | 1.00E-163 | FOG: Leucine rich repeat |
| nr | gi|672170096|ref|XP_008805099.1| | 0 | PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Phoenix dactylifera] |
| Swissprot | tr|Q9LP24|Y1571_ARATH | 4.00E-39 | Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor) |
| trEMBL | tr|M0SLU3|M0SLU3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P07260_001} |
| TAIR | AT5G61240 | 1.00E-163 | Leucine-rich repeat (LRR) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 746794 | 765669 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015635
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 99 | 157 | 2.80E-09 |
| PF12799.6 | LRR_4 | 169 | 211 | 3.10E-06 |
| PF13855.5 | LRR_8 | 220 | 279 | 1.70E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.150 |
| SRR2545915 | Juvenile tuber | 28.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.330 |
| SRR5643514 | five period of Gastrodia elata | 34.450 | |
| SRR5643515 | five period of Gastrodia elata | 32.590 | |
| SRR5643524 | five period of Gastrodia elata | 35.710 | |
| SRR5643525 | five period of Gastrodia elata | 49.440 | |
| SRR5643528 | five period of Gastrodia elata | 48.370 | |
| SRR5643658 | five period of Gastrodia elata | 62.360 | |
| SRR5643659 | five period of Gastrodia elata | 25.940 | |
| SRR5643660 | five period of Gastrodia elata | 24.310 | |
| SRR5643661 | five period of Gastrodia elata | 23.480 | |
| SRR5643662 | five period of Gastrodia elata | 19.710 | |
| SRR5643663 | five period of Gastrodia elata | 22.340 | |
| SRR5643664 | five period of Gastrodia elata | 16.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.00 |
| Juven | Juvenile tuber | 18.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.84 | |
| Mother_Juven | Mother tuber of Juvenile | 14.95 |