Gene detail

Detail information of GWHGAAEX015636/evm.TU.scaffold_7.17

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672143477\|ref\|XP_008795618.1\|	4.39E-117	PREDICTED: scarecrow-like protein 15 [Phoenix dactylifera]
Swissprot	tr\|O23210\|SCL15_ARATH	2.00E-72	Scarecrow-like protein 15
trEMBL	tr\|M0SJ13\|M0SJ13_MUSAM	4.00E-109	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P29970_001}
TAIR	AT4G36710	4.00E-71	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	938827	940571	+

Transcript Sequence
>GWHTAAEX015636 CTGAATTATGCTGCAATCCAATTATCTAAATTGTTCAAATTTTCAGTTCAGATAATGATCCGCACATCGGCAACCCATCATCAGAATCCCTCCCTTCCATCCATCATCTCTAGCATATAAAGTCCATCATCATTGCTTCGTAACAGGCCCTTCCACAAAATTCTCTCAATTGATGCTCCGTCTTCCTATCCAATGAAGATCCCCAAACCACCCTTGGTTTCCACACAAGTCTACGAGGCCACTTCCGATCCTTCGCTTGCCGCCGCCGCCGGCAGCCTCTGCCCAGCGGCTTACAACCTCCCATGGGATGCCTCCGAGATCGACTGGACAGATCCCTTCCCATTCCTCCTTGCAGACATAGACGACCCCTGCCTTAATTTTCCCGACCTTGCCCACCCTGCCGCGCCTCCGGCCGGGGCTGACACCTCCCACCTCGACCTCCTCCTTCGCGCCTCATACGCCGTAGAGAACGGAGACCTGAACTCCGCCCTTTCGATACTGACAAGGCTAAATCTCCTCCTCCCCTGCTCATCCGGCTCTCCTCTCCACCGCGCCGCCTTCCACTTCAAAGACGCCCTCCTATCCCTCCTCCCCATTCCGGACCGCCCCATCCCTGAACCCCCACTCTCCCCCATCGAGCTCATTCGCCGCATCGCCGCCCACAAAGCCCTCTCTGACATCTGCCCCATCCCGCAGTTCTCCTCCTTTACCGCCAATCAAACCCTGCTTGAATCCCTCGATGGTGCCGCATCCCTCCACCTGATTGACTTTGACCTCGGCCTCGGTGGCCAGTGGTCCTCCTTCACCCAAGATCTCGCAGCCCGCTCCCGCTCCGCCCACATCCGCCCTCCGTCCCTCCGTATCACTGCGGTCGTCTCGTCCGAAACCGCCGAGACAGCCCTCACCGCTGACAATCTTCGCGAATTTGCTCATGGGCTCGGTCTCCAGATATCGGTCGAATTCGTCTGCCTCGGCGCCCTGTCCGGGATCCGGCTTTCAGCCACCGAGGCCATCGCTGTCGTGCTCACGCCGACGATCTTGCAGGCTCTCGGTGCCTCGGCGCTACGGTTCTTGCGGCGGGCAGCGGTGCGGGCGGTTGTCGTGGTCGACACGGATGGCTGCAGCGGATCCGCAGGCTCGTTCCGGCGAAGATTCGCAGGGGGATTGGAGTACTATGCAAGTGTGATGGAGGTGGTCGAGGCCGGTGCGACTGCAGCTGGGGCGGGAGAGGAAGTGGTCAGGAGGATTGAAAGAGCGGTCTTCAGGCCTCGAATTTTCGCAGCGGCAGCGACGGCTGCAGCGGCGGCATCTGCTGCAGGTGATTGGAGGGAAGCGATGTCATCTGCGGGAATGGCTGCGGCGGAGCTGAGCGAGTTCACGGAGTCGCAGGCTGAGTGGTTGCTGCGGCGGGCTCCAGTTGATGGGTTCCACGTGGCCAGGAGGGAGGGGGCTCTAGTGCTCTGCTGGAAAGGCAAGCCATTGTCAACAACCTCGGCCTGGAGATGCGGCTGACTTCATTTAGACGTTATACTGTCAGCTCTGGTTCTTGAAATTTTTCTCAGTTTGAATGGCAATACTACGAATGACAATTCGTTCTTGCCTTGAATGCCTTAGTTAGGTATAATGTACCACTTGTGGGAACTCACCTTTTTTTTATTTTGGCATCTTTATAGATATATACATTCAAGGAGCTTAAATTGAAAGAATGGAAAAGGTTATTCTTACACAAGAATATACATCAAAAA

Network for GWHGAAEX015636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	82	437	1.40E-71

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.040
SRP064423	SRR2545915	Juvenile tuber	6.520
SRP108465	SRR5643513	five period of Gastrodia elata	3.130
	SRR5643514	five period of Gastrodia elata	4.220
	SRR5643515	five period of Gastrodia elata	2.270
	SRR5643524	five period of Gastrodia elata	3.630
	SRR5643525	five period of Gastrodia elata	72.110
	SRR5643528	five period of Gastrodia elata	43.240
	SRR5643658	five period of Gastrodia elata	50.290
	SRR5643659	five period of Gastrodia elata	7.530
	SRR5643660	five period of Gastrodia elata	9.210
	SRR5643661	five period of Gastrodia elata	10.390
	SRR5643662	five period of Gastrodia elata	20.490
	SRR5643663	five period of Gastrodia elata	16.080
	SRR5643664	five period of Gastrodia elata	21.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.420
SRP279888	Gastro	Gastrodia elata tuber	33.56
	Juven	Juvenile tuber	7.30
	Mother_Gastro	Mother tuber of Gastrodia elata	9.64
	Mother_Juven	Mother tuber of Juvenile	3.02