Detail information of GWHGAAEX015639/evm.TU.scaffold_7.21


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|408402825|ref|YP_006860808.1|1.00E-99preprotein translocase subunit SecY [Candidatus Nitrososphaera gargensis Ga9.2]
KOGKOG13730Transport protein Sec61, alpha subunit
nrgi|695042661|ref|XP_009408993.1|0PREDICTED: protein transport protein Sec61 subunit alpha-like [Musa acuminata subsp. malaccensis]
Swissprottr|P38379|SC61A_PYRSA0Protein transport protein Sec61 subunit alpha
trEMBLtr|M0TGB2|M0TGB2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P10240_001}
TAIRAT2G342500SecY protein transport family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000512142801221651+
Transcript Sequence

Network for GWHGAAEX015639

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10559.8Plug_translocon42762.20E-18
PF00344.19SecY774589.80E-76
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10956SEC61A Protein export map03060
Protein processing in endoplasmic reticulummap04141
Phagosomemap04145

Gene Ontology

GO term OntologyName
GO:0015031Biological Processprotein transport
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms218.490
SRR2545915Juvenile tuber378.250
SRP108465SRR5643513five period of Gastrodia elata266.280
SRR5643514five period of Gastrodia elata215.230
SRR5643515five period of Gastrodia elata260.230
SRR5643524five period of Gastrodia elata234.060
SRR5643525five period of Gastrodia elata157.990
SRR5643528five period of Gastrodia elata178.830
SRR5643658five period of Gastrodia elata126.510
SRR5643659five period of Gastrodia elata382.730
SRR5643660five period of Gastrodia elata358.060
SRR5643661five period of Gastrodia elata399.730
SRR5643662five period of Gastrodia elata359.290
SRR5643663five period of Gastrodia elata383.930
SRR5643664five period of Gastrodia elata350.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1261.370
SRR6049655Rhizomagastrodiae_C368-T10_good_1249.410
SRR6049656Rhizomagastrodiae_C368-T07_good_1259.020
SRR6049657Rhizomagastrodiae_C368-T07_good_1222.460
SRR6049658Rhizomagastrodiae_C368-T04_good_1210.490
SRR6049659Rhizomagastrodiae_C368-T04_good_1206.360
SRR6049660Rhizomagastrodiae_C368-T01_good_1207.620
SRR6049661Rhizomagastrodiae_C368-T04_good_1217.300
SRR6049662Rhizomagastrodiae_C368-T01_good_1300.640
SRR6049663Rhizomagastrodiae_C368-T01_good_1265.560
SRR6049664Rhizomagastrodiae_C368-T10_good_1301.490
SRR6049665Rhizomagastrodiae_C368-T10_good_1301.490
SRP279888GastroGastrodia elata tuber 321.30
JuvenJuvenile tuber284.34
Mother_GastroMother tuber of Gastrodia elata 177.18
Mother_JuvenMother tuber of Juvenile 251.35