Detail information of GWHGAAEX015640/evm.TU.scaffold_7.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428218015|ref|YP_007102480.1|4.00E-113cysteine synthase [Pseudanabaena sp. PCC 7367]
KOGKOG14810Cysteine synthase
nrgi|565358654|ref|XP_006346141.1|0PREDICTED: cysteine synthase 2-like [Solanum tuberosum]
Swissprottr|Q43153|CYSC_SPIOL1.00E-39Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial (Precursor)
trEMBLtr|M1C0Y5|M1C0Y5_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400057393}
TAIRAT1G558800Pyridoxal-5'-phosphate-dependent enzyme family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000512532861264658+
Transcript Sequence

Network for GWHGAAEX015640

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.24PALP453701.50E-63
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01738cysK Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0006535Biological Processcysteine biosynthetic process from serine

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.530
SRR2545915Juvenile tuber13.300
SRP108465SRR5643513five period of Gastrodia elata6.940
SRR5643514five period of Gastrodia elata6.320
SRR5643515five period of Gastrodia elata8.960
SRR5643524five period of Gastrodia elata6.140
SRR5643525five period of Gastrodia elata10.770
SRR5643528five period of Gastrodia elata8.110
SRR5643658five period of Gastrodia elata12.060
SRR5643659five period of Gastrodia elata18.950
SRR5643660five period of Gastrodia elata15.160
SRR5643661five period of Gastrodia elata21.590
SRR5643662five period of Gastrodia elata11.830
SRR5643663five period of Gastrodia elata23.420
SRR5643664five period of Gastrodia elata12.900
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.840
SRR6049655Rhizomagastrodiae_C368-T10_good_16.710
SRR6049656Rhizomagastrodiae_C368-T07_good_110.990
SRR6049657Rhizomagastrodiae_C368-T07_good_110.660
SRR6049658Rhizomagastrodiae_C368-T04_good_110.520
SRR6049659Rhizomagastrodiae_C368-T04_good_110.540
SRR6049660Rhizomagastrodiae_C368-T01_good_112.030
SRR6049661Rhizomagastrodiae_C368-T04_good_110.230
SRR6049662Rhizomagastrodiae_C368-T01_good_110.630
SRR6049663Rhizomagastrodiae_C368-T01_good_111.070
SRR6049664Rhizomagastrodiae_C368-T10_good_17.460
SRR6049665Rhizomagastrodiae_C368-T10_good_17.460
SRP279888GastroGastrodia elata tuber 8.01
JuvenJuvenile tuber8.83
Mother_GastroMother tuber of Gastrodia elata 7.56
Mother_JuvenMother tuber of Juvenile 5.56