Detail information of GWHGAAEX015645/evm.TU.scaffold_7.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0869 | 2.00E-69 | CCAAT-binding factor, subunit A (HAP3) |
| nr | gi|743847912|ref|XP_010939223.1| | 4.14E-78 | PREDICTED: nuclear transcription factor Y subunit B-3-like [Elaeis guineensis] |
| Swissprot | tr|O23310|NFYB3_ARATH | 7.00E-70 | Nuclear transcription factor Y subunit B-3 |
| trEMBL | tr|M1LJZ0|M1LJZ0_ALLSA | 3.00E-71 | Nuclear transcription factor Y subunit B-3-like protein {ECO:0000313|EMBL:AGF36555.1} |
| TAIR | AT4G14540 | 2.00E-69 | nuclear factor Y, subunit B3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 1527326 | 1528734 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015645
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00808.22 | CBFD_NFYB_HMF | 32 | 96 | 1.00E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08065 | NFYB | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.660 |
| SRR2545915 | Juvenile tuber | 36.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.450 |
| SRR5643514 | five period of Gastrodia elata | 30.740 | |
| SRR5643515 | five period of Gastrodia elata | 28.710 | |
| SRR5643524 | five period of Gastrodia elata | 34.570 | |
| SRR5643525 | five period of Gastrodia elata | 39.510 | |
| SRR5643528 | five period of Gastrodia elata | 61.180 | |
| SRR5643658 | five period of Gastrodia elata | 49.880 | |
| SRR5643659 | five period of Gastrodia elata | 29.960 | |
| SRR5643660 | five period of Gastrodia elata | 28.060 | |
| SRR5643661 | five period of Gastrodia elata | 27.550 | |
| SRR5643662 | five period of Gastrodia elata | 40.090 | |
| SRR5643663 | five period of Gastrodia elata | 36.760 | |
| SRR5643664 | five period of Gastrodia elata | 44.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.79 |
| Juven | Juvenile tuber | 29.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.18 | |
| Mother_Juven | Mother tuber of Juvenile | 52.61 |