Gene detail

Detail information of GWHGAAEX015646/evm.TU.scaffold_7.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116626609\|ref\|YP_828765.1\|	4.00E-21	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
KOG	KOG0600	0	Cdc2-related protein kinase
nr	gi\|672127268\|ref\|XP_008787098.1\|	0	PREDICTED: LOW QUALITY PROTEIN: probable serine/threonine-protein kinase At1g54610 [Phoenix dactylifera]
Swissprot	tr\|F4I114\|Y1960_ARATH	3.00E-155	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|W1PHD0\|W1PHD0_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN06520.1}
TAIR	AT1G18670	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	1695440	1729698	+

Transcript Sequence
>GWHTAAEX015646 ATGGGTTGTGCCTCTTCTAAGAATTTCGCGTCAGCTACGCCGGCGTTAGATTCATCCGGCATTCTCTGGGACCAGCTGAGATCCGAGGCTGTTTTAAAGAACTCGTTGAATGAGAATTTTGACAAGGAGCCGAATGAGGGTAAAGAGGTAGCTGCAGAGTCGAAGGAAGCAGAGAAGGGGGATCTGGAAAGCCCTAAATTGATTAGCATCCAATTGGGAAATCTTCACAAGCAAACGAAAGGGGAACAGATTGCAGCTGGATGGCCACCGTGGCTTACAACCGTGGCCACCGAGGCAATTTATGGATGGGTGCCTCTCAAAGCTGAAAATTTTGAGAAAATAGATAAGGTAGGGCAAGGCACCTACAGCACTGTTTTTCAAGCACGAAATCTTGAGACTGGGAAAGTTGTTGCACTAAAGAAGGTGCGCTTTGACAATTTTGAGCCGGAGAGTATTAAGTTCATGTCACGAGAGATAGTCATTCTTCGTCGACTTGACCATCCCAATATTATGAAATTGGAAGGTCTAATCGCGTCTCGATTTTCTTGTAACATATATCTAGTGAAGTGCTATATGAAACAATTACTATCTGGCCTTGAGCATTGTCATTCACGAGGAATCATCCATCGTGATATTAAGGGTGCTAATCTTCTGGTTAATAATGAAGGAATTTTAAAAATTGCTGATTTTGGTCTGGCAAATTCCATACAATCTGAACATAAGCAGCCCCTAACAAGTCGTGTTGTTAAACTATGGTATCGCCCACCTGAGCTTCTCTTGGGCTCCATTGATTATGGAGCATCAGTAGATTTATGGAGTGTTGGTTGTGTTTTTGCAGAGATGTTTCATAAGAAGCCCATTTTGCAAGGAAGAACTGAGGTTGAGCAACTGCACAAAATCTTTAAGTTATGCGGTTCTCCAACAGATGAATACTGGAAAAACTCCAAGTTGCCTCATGAAATAATTTTCAAGCCTCGTCGTCCATATGAGGGTCACTTACAAGAAACTTTCAGATGCATGTCCCACTCAGCCTACAAGTTACTGGAAGTATTTTTATCTGTAGAGCCTCAAAGGCGTGGAACCGCCGCATCTGCTCTAGCATCTGAGTATTTCACAATGACACCTCTTTCATGTGACCCATCAAGTTTGCCAAAATATCTTCCTACCAAAGAGCTTGATGTTAAAGATGATGAGAATGCTAACAGGTTTGGTTTGCGCACTTGCAGAGCACGAGTTGCAGAATTGGCGAAGAAGCCCTCGAGAGTTCACAGGCATCCACAGGAACCAAGTGGCATGAGCAAATTATCAAACAACCAAGAGGCTGAGGCTCGAAAAAATAAGCATGGAGCTGATACCCGCGGCGACACGTTAGCCTGTCCCAAAGTTCACGGCGCCTCGAGGCTCTTTGTGGATCCTCATCCAATGGCAACGGTTAAACCTTCCGATAGGGTTCGCCACATCAAGCACATTTCTCAAGGGGACGCTCCTTTCTCGGACTCCCTGCAGCACAATTCTTCTCATAACAAGCCACAGGAAGATCGCCCATTCGTGAAATCTCACAGCAAATCCACCTCAAGAAGCCACACTCGCGGCGTCGCTCCGGAACAGTCGTCTGCTATGAGAGCCCGATCTACTTTCGACTTTGAACACGCTTCGCATGAGCCGCTCAATCATCGCAGGCGAAACGAGCAGTACAAGATGGCGAAGAAGGCGGTGCTGAGAAATTGGGCGCAGCTGGAACGCCCTGACTCTTTCGATTCTTCCAGATTCCATTCCCATGATTTTTCGAGAGGAGGCGCGATTCGCTCCAAGCACAGCATGCCGGTGAGTGCGGGAACCTTCTCGTTTTTGGTCCGCCTGCACTTCTCTAGATTTCTTACTTTTTTATTTGAGATTTTAGGGTAA

Network for GWHGAAEX015646

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	111	186	7.50E-13
PF00069.24	Pkinase	187	371	3.70E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.250
SRP064423	SRR2545915	Juvenile tuber	1.270
SRP108465	SRR5643513	five period of Gastrodia elata	1.000
	SRR5643514	five period of Gastrodia elata	1.150
	SRR5643515	five period of Gastrodia elata	1.090
	SRR5643524	five period of Gastrodia elata	0.660
	SRR5643525	five period of Gastrodia elata	2.520
	SRR5643528	five period of Gastrodia elata	2.430
	SRR5643658	five period of Gastrodia elata	1.580
	SRR5643659	five period of Gastrodia elata	0.950
	SRR5643660	five period of Gastrodia elata	1.480
	SRR5643661	five period of Gastrodia elata	1.740
	SRR5643662	five period of Gastrodia elata	1.850
	SRR5643663	five period of Gastrodia elata	1.990
	SRR5643664	five period of Gastrodia elata	1.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.120
SRP279888	Gastro	Gastrodia elata tuber	2.22
	Juven	Juvenile tuber	0.94
	Mother_Gastro	Mother tuber of Gastrodia elata	3.44
	Mother_Juven	Mother tuber of Juvenile	1.57