Detail information of GWHGAAEX015650/evm.TU.scaffold_7.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|375149107|ref|YP_005011548.1|2.00E-13SWIB/MDM2 domain-containing protein [Niastella koreensis GR20-10]
KOGKOG19464.00E-31RNA polymerase I transcription factor UAF
nrgi|695066393|ref|XP_009380089.1|5.49E-39PREDICTED: protein TRI1-like [Musa acuminata subsp. malaccensis]
trEMBLtr|M0RJ82|M0RJ82_MUSAM2.00E-39Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P18070_001}
TAIRAT2G148804.00E-31SWIB/MDM2 domain superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000519420141972047+
Transcript Sequence

Network for GWHGAAEX015650

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02201.17SWIB701424.50E-28
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.310
SRR2545915Juvenile tuber18.990
SRP108465SRR5643513five period of Gastrodia elata12.980
SRR5643514five period of Gastrodia elata13.640
SRR5643515five period of Gastrodia elata12.650
SRR5643524five period of Gastrodia elata10.720
SRR5643525five period of Gastrodia elata10.800
SRR5643528five period of Gastrodia elata11.930
SRR5643658five period of Gastrodia elata12.650
SRR5643659five period of Gastrodia elata14.170
SRR5643660five period of Gastrodia elata14.560
SRR5643661five period of Gastrodia elata13.510
SRR5643662five period of Gastrodia elata13.990
SRR5643663five period of Gastrodia elata14.360
SRR5643664five period of Gastrodia elata15.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.170
SRR6049655Rhizomagastrodiae_C368-T10_good_118.200
SRR6049656Rhizomagastrodiae_C368-T07_good_115.480
SRR6049657Rhizomagastrodiae_C368-T07_good_112.820
SRR6049658Rhizomagastrodiae_C368-T04_good_115.030
SRR6049659Rhizomagastrodiae_C368-T04_good_114.140
SRR6049660Rhizomagastrodiae_C368-T01_good_114.500
SRR6049661Rhizomagastrodiae_C368-T04_good_114.500
SRR6049662Rhizomagastrodiae_C368-T01_good_114.770
SRR6049663Rhizomagastrodiae_C368-T01_good_114.950
SRR6049664Rhizomagastrodiae_C368-T10_good_111.470
SRR6049665Rhizomagastrodiae_C368-T10_good_111.470
SRP279888GastroGastrodia elata tuber 20.06
JuvenJuvenile tuber12.65
Mother_GastroMother tuber of Gastrodia elata 11.95
Mother_JuvenMother tuber of Juvenile 9.77