Detail information of GWHGAAEX015660/evm.TU.scaffold_7.67


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|15610513|ref|NP_217894.1|3.00E-27Halimadienyl diphosphate synthase [Mycobacterium tuberculosis H37Rv]
nrgi|743776005|ref|XP_010918398.1|0PREDICTED: ent-copalyl diphosphate synthase 1, chloroplastic-like isoform X1 [Elaeis guineensis]
Swissprottr|Q38802|KSA_ARATH0Ent-copalyl diphosphate synthase, chloroplastic (Precursor)
trEMBLtr|A0A068BCF4|A0A068BCF4_COCNU0Ent-copalyl diphosphate synthase {ECO:0000313|EMBL:AIC82453.1}
TAIRAT4G027800Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000534714873475569+
Transcript Sequence

Network for GWHGAAEX015660

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01397.20Terpene_synth1793841.20E-51
PF03936.15Terpene_synth_C4275082.50E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04120E5.5.1.13 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Diterpenoid biosynthesismap00904

Gene Ontology

GO term OntologyName
GO:0016829Molecular Functionlyase activity
GO:0000287Molecular Functionmagnesium ion binding
GO:0010333Molecular Functionterpene synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.210
SRR2545915Juvenile tuber9.890
SRP108465SRR5643513five period of Gastrodia elata31.350
SRR5643514five period of Gastrodia elata67.650
SRR5643515five period of Gastrodia elata65.030
SRR5643524five period of Gastrodia elata57.950
SRR5643525five period of Gastrodia elata53.840
SRR5643528five period of Gastrodia elata36.510
SRR5643658five period of Gastrodia elata34.090
SRR5643659five period of Gastrodia elata54.990
SRR5643660five period of Gastrodia elata64.470
SRR5643661five period of Gastrodia elata77.200
SRR5643662five period of Gastrodia elata57.130
SRR5643663five period of Gastrodia elata35.210
SRR5643664five period of Gastrodia elata31.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_179.590
SRR6049655Rhizomagastrodiae_C368-T10_good_166.540
SRR6049656Rhizomagastrodiae_C368-T07_good_1112.410
SRR6049657Rhizomagastrodiae_C368-T07_good_172.900
SRR6049658Rhizomagastrodiae_C368-T04_good_146.550
SRR6049659Rhizomagastrodiae_C368-T04_good_132.660
SRR6049660Rhizomagastrodiae_C368-T01_good_174.390
SRR6049661Rhizomagastrodiae_C368-T04_good_168.720
SRR6049662Rhizomagastrodiae_C368-T01_good_173.040
SRR6049663Rhizomagastrodiae_C368-T01_good_167.560
SRR6049664Rhizomagastrodiae_C368-T10_good_176.580
SRR6049665Rhizomagastrodiae_C368-T10_good_176.580
SRP279888GastroGastrodia elata tuber 15.63
JuvenJuvenile tuber62.73
Mother_GastroMother tuber of Gastrodia elata 23.40
Mother_JuvenMother tuber of Juvenile 9.18