Detail information of GWHGAAEX015661/evm.TU.scaffold_7.70


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28082.00E-169U5 snRNP-associated RNA splicing factor
nrgi|743791309|ref|XP_010923398.1|0PREDICTED: pre-mRNA-splicing factor 18-like [Elaeis guineensis]
trEMBLtr|W9R737|W9R737_9ROSA0Pre-mRNA-splicing factor 18 {ECO:0000313|EMBL:EXB39381.1}
TAIRAT1G031402.00E-169splicing factor Prp18 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000536141043618435-
Transcript Sequence

Network for GWHGAAEX015661

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08799.10PRP41131413.60E-11
PF02840.14Prp182363762.50E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12817PRPF18, PRP18 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0008380Biological ProcessRNA splicing
GO:0005681Cellular Componentspliceosomal complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms91.700
SRR2545915Juvenile tuber85.280
SRP108465SRR5643513five period of Gastrodia elata60.510
SRR5643514five period of Gastrodia elata52.680
SRR5643515five period of Gastrodia elata52.120
SRR5643524five period of Gastrodia elata46.820
SRR5643525five period of Gastrodia elata41.480
SRR5643528five period of Gastrodia elata31.910
SRR5643658five period of Gastrodia elata38.140
SRR5643659five period of Gastrodia elata61.420
SRR5643660five period of Gastrodia elata65.070
SRR5643661five period of Gastrodia elata66.760
SRR5643662five period of Gastrodia elata75.870
SRR5643663five period of Gastrodia elata66.820
SRR5643664five period of Gastrodia elata87.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_166.830
SRR6049655Rhizomagastrodiae_C368-T10_good_195.240
SRR6049656Rhizomagastrodiae_C368-T07_good_148.310
SRR6049657Rhizomagastrodiae_C368-T07_good_177.860
SRR6049658Rhizomagastrodiae_C368-T04_good_127.030
SRR6049659Rhizomagastrodiae_C368-T04_good_131.420
SRR6049660Rhizomagastrodiae_C368-T01_good_150.110
SRR6049661Rhizomagastrodiae_C368-T04_good_125.500
SRR6049662Rhizomagastrodiae_C368-T01_good_132.790
SRR6049663Rhizomagastrodiae_C368-T01_good_124.810
SRR6049664Rhizomagastrodiae_C368-T10_good_143.720
SRR6049665Rhizomagastrodiae_C368-T10_good_143.720
SRP279888GastroGastrodia elata tuber 52.49
JuvenJuvenile tuber105.70
Mother_GastroMother tuber of Gastrodia elata 50.96
Mother_JuvenMother tuber of Juvenile 64.82