Detail information of GWHGAAEX015664/evm.TU.scaffold_7.75


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17006.00E-109Regulatory protein MLP and related LIM proteins
nrgi|661895470|emb|CDP01275.1|6.09E-116unnamed protein product [Coffea canephora]
Swissprottr|Q94JX5|WLIM1_ARATH2.00E-109LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBLtr|A0A068TYA9|A0A068TYA9_COFCA2.00E-116Coffea canephora
TAIRAT1G102006.00E-109GATA type zinc finger transcription factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000538698063897740-
Transcript Sequence

Network for GWHGAAEX015664

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.21LIM10634.30E-10
PF00412.21LIM1101648.50E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLIM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.210
SRR2545915Juvenile tuber104.150
SRP108465SRR5643513five period of Gastrodia elata70.120
SRR5643514five period of Gastrodia elata79.810
SRR5643515five period of Gastrodia elata91.580
SRR5643524five period of Gastrodia elata101.390
SRR5643525five period of Gastrodia elata102.210
SRR5643528five period of Gastrodia elata93.100
SRR5643658five period of Gastrodia elata82.580
SRR5643659five period of Gastrodia elata90.450
SRR5643660five period of Gastrodia elata96.170
SRR5643661five period of Gastrodia elata121.250
SRR5643662five period of Gastrodia elata115.210
SRR5643663five period of Gastrodia elata133.850
SRR5643664five period of Gastrodia elata110.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_155.130
SRR6049655Rhizomagastrodiae_C368-T10_good_146.690
SRR6049656Rhizomagastrodiae_C368-T07_good_145.300
SRR6049657Rhizomagastrodiae_C368-T07_good_148.770
SRR6049658Rhizomagastrodiae_C368-T04_good_135.650
SRR6049659Rhizomagastrodiae_C368-T04_good_143.590
SRR6049660Rhizomagastrodiae_C368-T01_good_150.930
SRR6049661Rhizomagastrodiae_C368-T04_good_137.890
SRR6049662Rhizomagastrodiae_C368-T01_good_155.560
SRR6049663Rhizomagastrodiae_C368-T01_good_157.750
SRR6049664Rhizomagastrodiae_C368-T10_good_154.170
SRR6049665Rhizomagastrodiae_C368-T10_good_154.170
SRP279888GastroGastrodia elata tuber 67.20
JuvenJuvenile tuber62.42
Mother_GastroMother tuber of Gastrodia elata 58.20
Mother_JuvenMother tuber of Juvenile 59.64