Gene detail

Detail information of GWHGAAEX015667/evm.TU.scaffold_7.79

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434388384\|ref\|YP_007098995.1\|	2.00E-27	AAA+ family ATPase [Chamaesiphon minutus PCC 6605]
KOG	KOG0743	1.00E-169	AAA+-type ATPase
nr	gi\|743872953\|ref\|XP_010906691.1\|	0	PREDICTED: uncharacterized protein LOC105033529 [Elaeis guineensis]
Swissprot	tr\|Q9SL67\|PRS4B_ARATH	2.00E-13	26S proteasome regulatory subunit 4 homolog B
trEMBL	tr\|V4VJP1\|V4VJP1_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR52924.1}
TAIR	AT5G40010	1.00E-169	AAA-ATPase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	4042834	4044891	+

Transcript Sequence
>GWHTAAEX015667 TTCGAATAAAATGACATTAATATATTATAATAATAAAGTCTATTGTCTCTCTATATAAAGATCGGAAGAGATGGCGCTAAAAAAAAATAAAAAAAGCAAAGGAGAAGAGCAAAAGAGAAATCAGGAAGGAAAAAATGGAGGGAATGTGGGCGGGTTGGGGCTCAGCCTTAGCGAGCTTCATGTTTTTCTTTGCAATGGTGCGCCAATACTTTTCTGGGGCTCTGAGCGACAGCTTCCAGCTTTACGCCTCGAAGCTCATGGCCCTGTTTTACCCTTACGTAGAGATCACCATTATGGAGTACTCCAGCGAGCGAATGAAGCGCAGCGAGGCCTACTCTGCCGTGGAATCGTATCTCTCCGCCTCCCATTGCGCCCGCCACGCGCGGCGCCTCAAGGCAGATGCGGCGGACTCGGAAGGCTCCGGATCCACCGTAGTTCTGTCCATAGACGAGAGCGAGGAGGTAGTCGACTATTTTGCCGGGGCCAAGCTGTACTGGTCTTCCCATATCCGCCGCCCCGCAACCCCTTCATTTTCCTACTTCCCGTCTCCGCCCGACCAACATTTCTACCGCCTCTCCTTTCACCGCCGACACCGCGACCTGGTCGGCAAATCTTACCTCCCCCACGTTCTCGACCAAGGCGCAGCCGCCGGCTTCAGAAACCGCCGGCAGCGGCTTTACACCAACATCAGCTACCACGATAGCGATTACCGGAAGCGCCACTGGAGCCACATACGCTTTGAGCACCCCGCAACTTTTGAAACCATCGCCATGGATCCCGGCAAGAAGCGCGAAATTGTGAAGGATCTGATTGCCTTCAGCTGCGGGAAGGAGTTCTATTCCAGGATCGGAAAGCCTTGGAAGAGGGGGTATCTACTCTACGGCCCTCCGGGAACCGGCAAATCCACAATGATCGCCGCCATGGCCAACCTTCTCGATTACGACATCTATGATCTTGAGCTCACTGCGGTGAAGGACAACTTGGCGCTAAGAAGATTGTTGCTCGAAATCGGCGGCAAGGCGATCATCGTGATTGAGGACATCGATTGCTCCCTCGATCTGTCCGGGAAGAGGAAGGAGGCCAAAAAGCCGGAAGAGGGCGAGAAGAAAATGGGAAATGAGGGGGAGAAAGAAGGGAGCAAGGTTACGCTTTCAGGGCTGTTGAATTTCATCGACGGTTTATGGTCGGCGTGCGGAGGGGAGAGATTGGTGGTCTTCACGACCAATTTCGTGGAGAAGCTGGATCCGGCGCTCATAAGGAGCGGGAGAATGGATCGGCACATCCACCTCTCTTTCTGCGATTTCCAAGGTTTCAAAATTTTGGCGAGGAACTATTTGGACCTTGAGCAGCATCCGCTCTTTGCGGAAATACAGACTTTGTTGGAGGAGAGGAACATAACGCCCGCGGATGCCGCCGAGAGTCTGATGCCAAAGAAGGTTGCCGAAGCCGGCGAAGGCCCGGAGGTTTGCCTCAGAAGCCTTATCAAAGCTCTGAAGGAATCCAACTTCAAATTGGCCGCCTGTGATAAGGAGACCGTAGAAGTCACAACGATGTTGACGAAAGTGGCAGGAGAGGCCGAGGAGTAGCTGCTTTCTACTTAAATGATATAAGGCCTCTCAAGCAGCAAACTAGTAACCACTAATTACTATTATTCTTGATGGAATGGATCATAGTAACTATTCCACTTCTATGCTTTGCTGAATTATCACCAAGCAAGTTGTTGTCGTTGTTGGCTGTTGTTAAATAATCTTGAATTTAGCTATTGTTGTTGCATAATTATTTCCTGGTTTTGGTTGGAGTAATACATAAAGCAAAGCTGAAGAAGAAGACAAAGCATCCAAATTAATAAGTTGGTGCTTTAGCTAGGTTAATCGCTTGTTGTTGCAACGAATGCTCTATATTTTGCTTAAAAGAAGATCCTATAAACATACAATAACTATGTGATAGATTTGTGTGTATATATACATGATGCACAATCAATATCATTTAATAATTTCTGCTATTAACATGCAGAAAAAGAAGAGAAGATGCATTCCTGAACTGCCTATTTAATTTTCC

Network for GWHGAAEX015667

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14363.5	AAA_assoc	35	124	1.10E-18
PF00004.28	AAA	247	385	3.70E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.910
SRP064423	SRR2545915	Juvenile tuber	1.380
SRP108465	SRR5643513	five period of Gastrodia elata	58.590
	SRR5643514	five period of Gastrodia elata	20.940
	SRR5643515	five period of Gastrodia elata	41.290
	SRR5643524	five period of Gastrodia elata	27.920
	SRR5643525	five period of Gastrodia elata	1.020
	SRR5643528	five period of Gastrodia elata	10.730
	SRR5643658	five period of Gastrodia elata	1.770
	SRR5643659	five period of Gastrodia elata	3.250
	SRR5643660	five period of Gastrodia elata	4.520
	SRR5643661	five period of Gastrodia elata	4.400
	SRR5643662	five period of Gastrodia elata	5.560
	SRR5643663	five period of Gastrodia elata	1.720
	SRR5643664	five period of Gastrodia elata	18.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.320
SRP279888	Gastro	Gastrodia elata tuber	0.29
	Juven	Juvenile tuber	40.46
	Mother_Gastro	Mother tuber of Gastrodia elata	45.78
	Mother_Juven	Mother tuber of Juvenile	26.99