Detail information of GWHGAAEX015674/evm.TU.scaffold_7.92
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-132 | FOG: PPR repeat |
| nr | gi|743886678|ref|XP_010910203.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g28660-like [Elaeis guineensis] |
| Swissprot | tr|Q9LJJ1|PP259_ARATH | 2.00E-153 | Putative pentatricopeptide repeat-containing protein At3g28640 |
| trEMBL | tr|M0U537|M0U537_MUSAM | 8.00E-178 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP00250_001} |
| TAIR | AT3G28640 | 2.00E-132 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 4595907 | 4598861 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015674
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 179 | 205 | 0.0045 |
| PF01535.19 | PPR | 250 | 271 | 0.0013 |
| PF01535.19 | PPR | 279 | 305 | 0.29 |
| PF01535.19 | PPR | 318 | 340 | 0.084 |
| PF01535.19 | PPR | 351 | 377 | 0.0044 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.080 |
| SRR2545915 | Juvenile tuber | 5.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.480 |
| SRR5643514 | five period of Gastrodia elata | 6.820 | |
| SRR5643515 | five period of Gastrodia elata | 5.090 | |
| SRR5643524 | five period of Gastrodia elata | 7.400 | |
| SRR5643525 | five period of Gastrodia elata | 3.440 | |
| SRR5643528 | five period of Gastrodia elata | 2.710 | |
| SRR5643658 | five period of Gastrodia elata | 2.620 | |
| SRR5643659 | five period of Gastrodia elata | 7.690 | |
| SRR5643660 | five period of Gastrodia elata | 9.240 | |
| SRR5643661 | five period of Gastrodia elata | 9.630 | |
| SRR5643662 | five period of Gastrodia elata | 9.530 | |
| SRR5643663 | five period of Gastrodia elata | 8.320 | |
| SRR5643664 | five period of Gastrodia elata | 9.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.83 |
| Juven | Juvenile tuber | 9.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.91 | |
| Mother_Juven | Mother tuber of Juvenile | 4.90 |