Detail information of GWHGAAEX015679/evm.TU.scaffold_7.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357387229|ref|YP_004902067.1| | 5.00E-11 | putative amino acid transporter [Kitasatospora setae KM-6054] |
| KOG | KOG1287 | 6.00E-63 | Amino acid transporters |
| nr | gi|672131581|ref|XP_008789352.1| | 8.35E-73 | PREDICTED: probable polyamine transporter At3g13620 [Phoenix dactylifera] |
| Swissprot | tr|Q9LHN7|PHSC_ARATH | 2.00E-63 | Probable polyamine transporter At3g13620 |
| trEMBL | tr|M0U705|M0U705_MUSAM | 1.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06940_001} |
| TAIR | AT3G13620 | 6.00E-63 | Amino acid permease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 4935823 | 4987225 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015679
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 357 | 492 | 1.80E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.980 |
| SRR2545915 | Juvenile tuber | 3.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.850 |
| SRR5643514 | five period of Gastrodia elata | 15.180 | |
| SRR5643515 | five period of Gastrodia elata | 10.350 | |
| SRR5643524 | five period of Gastrodia elata | 13.080 | |
| SRR5643525 | five period of Gastrodia elata | 68.670 | |
| SRR5643528 | five period of Gastrodia elata | 64.020 | |
| SRR5643658 | five period of Gastrodia elata | 66.120 | |
| SRR5643659 | five period of Gastrodia elata | 5.520 | |
| SRR5643660 | five period of Gastrodia elata | 2.470 | |
| SRR5643661 | five period of Gastrodia elata | 5.620 | |
| SRR5643662 | five period of Gastrodia elata | 7.100 | |
| SRR5643663 | five period of Gastrodia elata | 6.050 | |
| SRR5643664 | five period of Gastrodia elata | 6.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.79 |
| Juven | Juvenile tuber | 17.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.61 | |
| Mother_Juven | Mother tuber of Juvenile | 29.42 |