Detail information of GWHGAAEX015687/evm.TU.scaffold_7.119


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|509152903|ref|YP_008073144.1|1.00E-84ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae SY1027]
KOGKOG03400ATP-dependent RNA helicase
nrgi|700255697|gb|AIU49467.1|0RNA helicase 36, partial [Iris japonica]
Swissprottr|Q9SA27|RH36_ARATH0DEAD-box ATP-dependent RNA helicase 36
trEMBLtr|A0A097PN57|A0A097PN57_9ASPA0RNA helicase 36 {ECO:0000313|EMBL:AIU49467.1} (Fragment)
TAIRAT1G162800RNA helicase 36

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000551359975172372-
Transcript Sequence

Network for GWHGAAEX015687

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD742416.00E-45
PF00271.30Helicase_C2923894.40E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.350
SRR2545915Juvenile tuber7.530
SRP108465SRR5643513five period of Gastrodia elata10.900
SRR5643514five period of Gastrodia elata11.640
SRR5643515five period of Gastrodia elata10.200
SRR5643524five period of Gastrodia elata11.700
SRR5643525five period of Gastrodia elata8.160
SRR5643528five period of Gastrodia elata7.100
SRR5643658five period of Gastrodia elata7.390
SRR5643659five period of Gastrodia elata10.640
SRR5643660five period of Gastrodia elata9.800
SRR5643661five period of Gastrodia elata9.770
SRR5643662five period of Gastrodia elata9.840
SRR5643663five period of Gastrodia elata10.260
SRR5643664five period of Gastrodia elata9.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.060
SRR6049655Rhizomagastrodiae_C368-T10_good_111.970
SRR6049656Rhizomagastrodiae_C368-T07_good_112.020
SRR6049657Rhizomagastrodiae_C368-T07_good_111.150
SRR6049658Rhizomagastrodiae_C368-T04_good_110.570
SRR6049659Rhizomagastrodiae_C368-T04_good_110.290
SRR6049660Rhizomagastrodiae_C368-T01_good_111.740
SRR6049661Rhizomagastrodiae_C368-T04_good_19.960
SRR6049662Rhizomagastrodiae_C368-T01_good_112.480
SRR6049663Rhizomagastrodiae_C368-T01_good_111.240
SRR6049664Rhizomagastrodiae_C368-T10_good_115.600
SRR6049665Rhizomagastrodiae_C368-T10_good_115.600
SRP279888GastroGastrodia elata tuber 13.57
JuvenJuvenile tuber17.93
Mother_GastroMother tuber of Gastrodia elata 9.91
Mother_JuvenMother tuber of Juvenile 18.30