Detail information of GWHGAAEX015688/evm.TU.scaffold_7.120


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-100FOG: PPR repeat
nrgi|743825019|ref|XP_010932929.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Elaeis guineensis]
Swissprottr|Q1PFC5|PP130_ARATH5.00E-173Pentatricopeptide repeat-containing protein At1g77405
trEMBLtr|D7KUI9|D7KUI9_ARALL3.00E-173Binding protein {ECO:0000313|EMBL:EFH63940.1}
TAIRAT1G774052.00E-100Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000552208095224356+
Transcript Sequence

Network for GWHGAAEX015688

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1581860.00092
PF13041.5PPR_21892402.20E-12
PF13041.5PPR_22723175.10E-14
PF01535.19PPR3473750.031
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.540
SRR2545915Juvenile tuber1.220
SRP108465SRR5643513five period of Gastrodia elata2.190
SRR5643514five period of Gastrodia elata2.820
SRR5643515five period of Gastrodia elata1.640
SRR5643524five period of Gastrodia elata2.140
SRR5643525five period of Gastrodia elata1.360
SRR5643528five period of Gastrodia elata1.080
SRR5643658five period of Gastrodia elata0.750
SRR5643659five period of Gastrodia elata2.560
SRR5643660five period of Gastrodia elata1.950
SRR5643661five period of Gastrodia elata2.020
SRR5643662five period of Gastrodia elata2.100
SRR5643663five period of Gastrodia elata1.780
SRR5643664five period of Gastrodia elata1.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.080
SRR6049655Rhizomagastrodiae_C368-T10_good_13.320
SRR6049656Rhizomagastrodiae_C368-T07_good_12.930
SRR6049657Rhizomagastrodiae_C368-T07_good_11.930
SRR6049658Rhizomagastrodiae_C368-T04_good_12.390
SRR6049659Rhizomagastrodiae_C368-T04_good_10.720
SRR6049660Rhizomagastrodiae_C368-T01_good_11.920
SRR6049661Rhizomagastrodiae_C368-T04_good_12.670
SRR6049662Rhizomagastrodiae_C368-T01_good_14.060
SRR6049663Rhizomagastrodiae_C368-T01_good_12.060
SRR6049664Rhizomagastrodiae_C368-T10_good_12.330
SRR6049665Rhizomagastrodiae_C368-T10_good_12.330
SRP279888GastroGastrodia elata tuber 2.23
JuvenJuvenile tuber3.77
Mother_GastroMother tuber of Gastrodia elata 1.67
Mother_JuvenMother tuber of Juvenile 1.77