Detail information of GWHGAAEX015702/evm.TU.scaffold_7.146


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01182.00E-133FOG: RRM domain
nrgi|694996268|ref|XP_009393110.1|3.64E-141PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9S7N9|CID12_ARATH5.00E-134Polyadenylate-binding protein-interacting protein 12
trEMBLtr|A0A061G382|A0A061G382_THECC2.00E-140CTC-interacting domain 11 isoform 1 {ECO:0000313|EMBL:EOY23858.1}
TAIRAT4G106102.00E-133CTC-interacting domain 12

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000566828236700011+
Transcript Sequence

Network for GWHGAAEX015702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07145.14PAM284982.30E-05
PF00076.21RRM_11692316.50E-13
PF00076.21RRM_12663333.70E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.290
SRR2545915Juvenile tuber31.100
SRP108465SRR5643513five period of Gastrodia elata31.390
SRR5643514five period of Gastrodia elata26.020
SRR5643515five period of Gastrodia elata30.570
SRR5643524five period of Gastrodia elata32.360
SRR5643525five period of Gastrodia elata53.110
SRR5643528five period of Gastrodia elata119.890
SRR5643658five period of Gastrodia elata52.260
SRR5643659five period of Gastrodia elata29.770
SRR5643660five period of Gastrodia elata29.960
SRR5643661five period of Gastrodia elata37.290
SRR5643662five period of Gastrodia elata37.420
SRR5643663five period of Gastrodia elata34.380
SRR5643664five period of Gastrodia elata33.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.010
SRR6049655Rhizomagastrodiae_C368-T10_good_133.220
SRR6049656Rhizomagastrodiae_C368-T07_good_128.010
SRR6049657Rhizomagastrodiae_C368-T07_good_123.310
SRR6049658Rhizomagastrodiae_C368-T04_good_131.060
SRR6049659Rhizomagastrodiae_C368-T04_good_127.560
SRR6049660Rhizomagastrodiae_C368-T01_good_123.650
SRR6049661Rhizomagastrodiae_C368-T04_good_121.930
SRR6049662Rhizomagastrodiae_C368-T01_good_135.710
SRR6049663Rhizomagastrodiae_C368-T01_good_135.130
SRR6049664Rhizomagastrodiae_C368-T10_good_146.880
SRR6049665Rhizomagastrodiae_C368-T10_good_146.880
SRP279888GastroGastrodia elata tuber 27.20
JuvenJuvenile tuber29.08
Mother_GastroMother tuber of Gastrodia elata 63.45
Mother_JuvenMother tuber of Juvenile 60.26