Detail information of GWHGAAEX015705/evm.TU.scaffold_7.151
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1896 | 0 | mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) |
| nr | gi|672136525|ref|XP_008791964.1| | 0 | PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9FGR0|CPSF1_ARATH | 0 | Cleavage and polyadenylation specificity factor subunit 1 |
| trEMBL | tr|A0A061G7F2|A0A061G7F2_THECC | 0 | Cleavage and polyadenylation specificity factor 160 isoform 1 {ECO:0000313|EMBL:EOY22974.1} |
| TAIR | AT5G51660 | 0 | cleavage and polyadenylation specificity factor 160 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 6805257 | 6920167 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015705
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10433.8 | MMS1_N | 132 | 710 | 6.20E-39 |
| PF03178.14 | CPSF_A | 1087 | 1422 | 3.50E-87 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14401 | CPSF1, CFT1 | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.700 |
| SRR2545915 | Juvenile tuber | 22.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.560 |
| SRR5643514 | five period of Gastrodia elata | 14.560 | |
| SRR5643515 | five period of Gastrodia elata | 11.390 | |
| SRR5643524 | five period of Gastrodia elata | 12.420 | |
| SRR5643525 | five period of Gastrodia elata | 10.520 | |
| SRR5643528 | five period of Gastrodia elata | 6.840 | |
| SRR5643658 | five period of Gastrodia elata | 7.790 | |
| SRR5643659 | five period of Gastrodia elata | 9.050 | |
| SRR5643660 | five period of Gastrodia elata | 11.700 | |
| SRR5643661 | five period of Gastrodia elata | 10.950 | |
| SRR5643662 | five period of Gastrodia elata | 8.640 | |
| SRR5643663 | five period of Gastrodia elata | 10.530 | |
| SRR5643664 | five period of Gastrodia elata | 10.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.22 |
| Juven | Juvenile tuber | 12.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.64 | |
| Mother_Juven | Mother tuber of Juvenile | 11.15 |