Gene detail

Detail information of GWHGAAEX015710/evm.TU.scaffold_7.157

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4197	FOG: PPR repeat
nr	gi\|672125743\|ref\|XP_008786296.1\|	PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Phoenix dactylifera]
Swissprot	tr\|Q9LS25\|PP420_ARATH	Pentatricopeptide repeat-containing protein At5g46580, chloroplastic (Precursor)
trEMBL	tr\|D7MRC5\|D7MRC5_ARALL	Pentatricopeptide repeat-containing protein {ECO:0000313\|EMBL:EFH39656.1}
TAIR	AT5G46580	pentatricopeptide (PPR) repeat-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	7101658	7103547	-

Transcript Sequence
>GWHTAAEX015710 ATGGCATTACTGATATCGGCCCCATTCTCCTCCGTTCCGCCCTCCTCCAGCCCTCTTTCATCCCCGCCGTCAAAGCCGACTCGATCCTCCAACGTCGTCGAAAACCCTAACCCTCCCCTCTCCGATCAACTCCTTCCCCTCTCTTTGACCCTCCTGAAGCAAAGTTCCCCCATTCTCCCCCAAGCCCCAATCTGGACGAATCCCTCCAAGCCCAAGCCAGGGATCCTCCTCCCCCACCGCCATCCCCGCTCTTCCTCCTCCTCATCCCCCTCCGCCCTCACCGTCCTCAAATCCCTGCACCCATGGCAGAAAACCCTACGCTTCTTCTCCTTCATTCAGTCCAAGTCCCCTTCCTCCCCTCTCGGCACCATCTTCTACAACGTCCTCCTCAACTCCCTTCGATCCGGCCGCCAGTTCGCCCTTGCCGAATCCGTGGCCGCCGAGATGATCCGCCTAGCCGTACCCCTCGACAACATCACCTACTCCACCCTCATCGCCTGCTCCAAGAGCTGCCGCAGCTTCAGCCGCGCCCTCCGCTGGTTCGACCGACTCTACCGCTCCGGCCTTCTTCCCGACGACATCACCTACTCCGCCGTGCTCGACGTCTACGCCGAACTCGGCCGCCGCGAGGACGCCGTCGCGTTCTACGAGCGGGCCCGCGCGACCGGCTGGGCGCCGGATAACGCCGCACTATCCGTCCTCGCGAAGCTCCCTGGCGGGTTACGCTACGTTCTCGGGGAGATCAGGGCGCTCGCGGCGAAGCCCAACGTCATCCTCTACAACGCCCTTTTGGCGGCGGCGGGGAGGGCCGGGCGACCCGGGCTCGCACGCAAGCTGTTCGACGAAATGCTCGCTTCGGGATTGCGGCCAGACGAGCGAACGCTCACGACCGCAGTCAAGATTTACGGGAAGGCGGGGTGGGGGAGGGACGTTGTCGGGCTTTGGGAGAAGATGAGGGCCATGAATTGGCCCACTGACTTCATTCTGCGCAACACCCTGCTGAGCGCCTGCGCTGAGCTCGGGTTGGAGAACGACGCGGAGAAGCTGTTCGGTGAAATGACGCAGCCGGATAGCTTCAGCTACACAGCGATGATCGAAGTGTACGCCGGCGCCAACAAGGCGGACAGAGCTCTGGAAGTGTTTCATGAAATGGTAGAAAGAGGGGTGGAGCCGAACGTGATGAGCTTCACCTGCTTGATCCGATGCCTGGGAAAGGTTGGGCGGATCGGCGACGCCATGCGGATATTCGACGTGTTGATGAAGAGAGGGGTGAAGTGCGATGACTGGCTCTGCGGCTGCCTGCTGTCGTTGATCGCTGTGAGCGACGAGGCGAATGGGAAGAAGGTGATGGGTTGCCTCGGGAAGGCTAATCCGAGGCTGGCTGGGTTTGTGGAGCTAATGGGCAGCAATGGCGCCAATTTCGACGAAGTTCGGGCAGAGCTGAGGGGGATTCTGAACGAAGCAGACGAGTATGCTCGCAAGCCATTCTGCAACAGCTTGATAGATATATGCAGCAGGAAAGGAGGAGGGTATCCGCCTGGAAGAGCCTGCGAGCTGCTTCGGTTGGGAATAACGCATGGACTGTATTCCGGTTTGCACAAGGAGAGGTCTGAGGAGTGGGTCTTAAATCTGAGGTCTCTGTCGGTTGGCGCAGCCTGCACTGCTTTTGAAGAATGGATGGACACTCTATTTGATTCGGTTGAACACGGGCGAGCACTGCCGCGTCAATTTAAGATTCAGGCCAGCTCCAGAGCTCGCTCAGGATTGGCTTCTGCTGTTGGCTCGTATACAGAAGAGTTAGCTGCTCCGTTCAGGCAGAGCGGAGAGAGCGGCTGTTTCGTCGCAATGAAAGAGGATTTGATCTCGTGGCTCAAGTCCAGAGCAATTTGA

Network for GWHGAAEX015710

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13812.5	PPR_3	145	203	0.0023
PF13041.5	PPR_2	255	300	4.60E-09
PF01535.19	PPR	331	354	0.0074
PF13041.5	PPR_2	356	404	3.30E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.000
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	13.800
	SRR5643528	five period of Gastrodia elata	16.650
	SRR5643658	five period of Gastrodia elata	16.210
	SRR5643659	five period of Gastrodia elata	4.120
	SRR5643660	five period of Gastrodia elata	3.900
	SRR5643661	five period of Gastrodia elata	2.890
	SRR5643662	five period of Gastrodia elata	18.500
	SRR5643663	five period of Gastrodia elata	12.970
	SRR5643664	five period of Gastrodia elata	12.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.000
SRP279888	Gastro	Gastrodia elata tuber	2.87
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.00