Gene detail

Detail information of GWHGAAEX015711/evm.TU.scaffold_7.159

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743827119\|ref\|XP_010933504.1\|	1.22E-117	PREDICTED: NAC domain-containing protein 45-like [Elaeis guineensis]
Swissprot	tr\|Q9FFI5\|NAC86_ARATH	8.00E-69	NAC domain-containing protein 86 {ECO:0000312\|EMBL:AED92405.1}
trEMBL	tr\|A0A0A0LHB5\|A0A0A0LHB5_CUCSA	2.00E-98	Uncharacterized protein {ECO:0000313\|EMBL:KGN60409.1}
TAIR	AT4G17980	3.00E-85	NAC domain containing protein 71

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	7157239	7161463	+

Transcript Sequence
>GWHTAAEX015711 GCCAAACAAACACCGATTCTCTCCAAAATTCCAGCAGAGTTCAAGATTTTTTAAAGTTTTTTAGCATAAAAATGCACTTTTGATGCTTGCACTTCATTCAAAATGTTATCTTGAGTGCATAATCCTCTGTTCTACATAGTGATTAGATTTATTTCTGGATTCTTCTTCTGTTTTTAAGGGTTTGGCTTTCTTAGAATAATGCTCTGGCTGCACAACGGTGCAAACATCTGGATTTTCTATTTCATTCTAAAGGAATTTCAGTTGGAGAAAAGTTTATACTTTTGGATATTTCAAAGAACTTTGAATTTGATAAATGGGTGCTATGTCTTTGCCTCCTGGTTTCCGCTTCCATCCCACAGACGATGAACTGGTGGGATATTACTTGAAGAGAAAGGTAGATGGACAAAAGATTGAGCTTGAAGTGATTCCAGTTGTAGATTTGTACAAATTTGATCCATGGGAATTACCAGAGAAATCATTCCTGCCAAATAGAGACTTGGAATGGTTCTTCTTCTGCCCGAGGGACCGAAAGTACCCAAATGGGTCTCGAACAAACAGAGCAACAAATGCCGGCTACTGGAAAGCTACTGGAAAAGATAGAAAAATTACGTGCGAGTTTTCTGTCAAGGGATTGAGAAAAACTCTTGTTTTTTACATAGGAAGAGCACCTGGAGGTGAAAGAACAGAGTGGGTAATGCATGAGTACCGCCTCTGTGAAGATCTTCCCCAAGGAACCATCTCTTTCTTGGGAGCATATGCCTTATGCCGTATAGTAAAGAGAAATGAACTTGGGCATCAAGGAGAGCCTAAAATTAAAGGTGTTCTTCCTTCTGCCTCAAGTAAACCAAGCAAGAGGAAATATAACAGTAAAATCTCTAAAAGTTTAGAAGGAAATTCTTCTCAATTAGTGAATCTCTTGGATGAGAGTAAACCTCCCTCTCATTCAAATTTATTCAAAGATGTGAACTTTGACTTAGCCTCAGCGATGGCAGGTGCTTGCCAAGCAGAGTACAGCTCTCCACTTGCTCATTCAGATACTTCTAAGGATATTATTCTTGAAGGCGACATATCTGAGAAATTTTTTCCAGTTCAGTTCCACTGTTCCACAGAATCATCCCTGACAAATGGCATTTCTCCAGTTTCATCCTTTTCAAATCTCACAGATGAAGCATTTTTAATTGAGCAAACAGATCAGAACGGTTTTTCTTCGATGAACATTTATTACAATGAAGAGAGCATGCCGTTGCAAAATCACGAGTGGATTGAAGATAGATTTTTTCTTCCAAGAACTAGTGGTAATGAACCATGGAATACTATGATCTCCACTCCATTATGCCGTCATGAAAGCGGTGATGAACAGAACAACTTCTTGTCGCAAGAAGAAGGCTTATTGTTTGTGATTTGAATGATTGTATGTCTCAAATCAAGATGGTGAAAAATAAAATTATGATAGTGAAGTTTATATACTCTCATGCAACGCTTTTCACTGATTGCATCGAGAGGCAGCTTTAGATTATATGAGTAGTCATTTGTAAATATATAAAGAGAATAAAGCTCTCCAGAGCAACCCTTTTTTAAGCTTGTCAATGGAGACGCCGAGTTCAGAGTATGAAGGTCAAGTTTGCTATGGCTATAACTTTGAGAGAATGTTGCGTGTGAGTGTATGGTTTGGGAGTAGCTTTCAGTTTCAGCTTTTTTAAGTGTGAACGGTTTGTAATTTCTATGATCTATAGAAATGGAAACCTGTATCTGTCATGGCAGACAAAGCTTTGTGCAACATATGGGAACGAAGTATTTAATATTGAAATAAAAATAATAAATTTTCAACTTGATTTCGCAAAAAGAAATACTCGAACATATATGAGCACTTCAAGAATAAAAAATGGTGTTTATATTCTACTTTTTTTC

Network for GWHGAAEX015711

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.14	NAM	7	133	4.40E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.050
SRP064423	SRR2545915	Juvenile tuber	0.500
SRP108465	SRR5643513	five period of Gastrodia elata	3.820
	SRR5643514	five period of Gastrodia elata	1.670
	SRR5643515	five period of Gastrodia elata	1.080
	SRR5643524	five period of Gastrodia elata	2.240
	SRR5643525	five period of Gastrodia elata	1.200
	SRR5643528	five period of Gastrodia elata	1.800
	SRR5643658	five period of Gastrodia elata	1.640
	SRR5643659	five period of Gastrodia elata	0.780
	SRR5643660	five period of Gastrodia elata	0.070
	SRR5643661	five period of Gastrodia elata	0.340
	SRR5643662	five period of Gastrodia elata	0.260
	SRR5643663	five period of Gastrodia elata	0.110
	SRR5643664	five period of Gastrodia elata	0.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.870
SRP279888	Gastro	Gastrodia elata tuber	0.58
	Juven	Juvenile tuber	0.57
	Mother_Gastro	Mother tuber of Gastrodia elata	2.96
	Mother_Juven	Mother tuber of Juvenile	0.99