Gene detail

Detail information of GWHGAAEX015713/evm.TU.scaffold_7.161

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|326803549\|ref\|YP_004321367.1\|	4.00E-33	ribosome biogenesis GTP-binding protein YlqF [Aerococcus urinae ACS-120-V-Col10a]
KOG	KOG2485	9.00E-65	Conserved ATP/GTP binding protein
nr	gi\|672125747\|ref\|XP_008786299.1\|	2.37E-163	PREDICTED: mitochondrial ribosome-associated GTPase 1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	2.00E-07	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|M0RT59\|M0RT59_MUSAM	1.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P17790_001}
TAIR	AT2G41670	9.00E-65	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	7239976	7260218	+

Transcript Sequence
>GWHTAAEX015713 AATAAGCACAAAGAAGCGAGGCGTGCATCACAGAATAAAAACAATTTGGAGATATTTTTGATTATTTTTAATCATTTACTATAAGATTTCATCCGACAACATTACATATTGTCTCCCCGGCATCTTCCTCACTTCTTCGAAGTTTTTCGATCGCTGAATCATACAAGACCGAGATTTTTGAGCGATTCAACCTTTTCTTCCTTTGCGGAATTTGAGTAAACCCTGCAGCCAAACAGGCACGTCGTTTTTTAATCTCATCGACTTCCCAATGGCTGTGATAAGTTCCTTCTCGAAGCGATTGGGCTTTGCAGTACAGGAGATCGGGAGAAAGAAAGGATGCGGGAGCTGGTACGGGACACAAATGGCTGCTGCTGAGCGTGCGATCCAGGAGAGATTCCCTATGGTAGATCTTATTGTAGAGGTTCGTGACGCTAGGATCCCCATTACATCTGCTTTTGAACCAGCTAGGCATGTTATACATTCCCATAAGCATATGATTATTTTAAACAAGATGGATCTAGCAGATTGCTCTCTGACAGAGGAGTGGACTGTGCATCTTCAGAAACAGAATCTTATTTGTCTTGGAGTGAATTCACACAACAATGATAGTATTAAGCAGCTGCTAAACGTTGTGAAGAAAAGAGTCAAGGAACTGAGAGTTGGTAAAGTGCAAGATACTGCAACAGTATTATTGGTGGGTATCCCCAATGTTGGAAAATCAGCTCTTACCAATTCTTTGCATCTCGTGGGCAGGAAAGATGCGGCAGAGAAAGGAAAACTAAAACATGCAGTTGTGAGTTCACAGCCTGGAGAGACTATAGGTATTGACAGTTATAAGATTGGGAGCCATCCCAACATATATGTGTTTGATACGCCTGGTGTTCTGTCTGCTGAAATTGCTGATGTTAACTCTGGTTCCAAACTTGCCTTAACAGGTGCCATCAAAGATTCACTAATTGGTGAATATAGTCTTGCTCGATATTTACTTTCTGTTCTCAGCTCTTCAGATGTATACAAACGTTGGGAGGAGTTGAAATATGCTCCGACTGAGATTTTGTCATCAGACAGCCAGACAGGAAAATTTGTTGCTTCTGGCCAAAAGAGAAGAAAACAGTATTTTTCAGATCATACACAGGATTTCGTTGTCCGGAATGTACGCCAAACACTTTTCAACTCTTTATCATCATTTAAGCTGCACCTAGACAGTGAAGAAGAAATGGAAAGCTGCACTAATTCTGTATTTACTGCATTATGTGAACCTTTAAGGATTTTAAATGAATCAGAAGTTGGCAAATATAATGCTGTTGCCTCCAAATTACTTAATCTATATCGAACTGGAAGGCTTGGTCGATATACCATTGATCATCTTCCAAGAAATGTTTAAATATTCTGTGACTAACAAAAAGCTTCTGCTGGCTTAGAACATAAATGCTCAAGAATAGAATAGGCATAATTTAAAAAGTTTAGCATGGAAGCTTTAGTTATATTGATGGATGAATTATTATATTCTAAATGATTGTGGATTCATTTGGATGGTTTTAGCTTATCTTGAGGCTGTATTGTAGTATGCTGAAATTGCAAATTTCTTGTAGATAATGAAGTTATTATCTATGTTCTAGTATTCT

Network for GWHGAAEX015713

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	140	214	3.90E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.360
SRP064423	SRR2545915	Juvenile tuber	15.910
SRP108465	SRR5643513	five period of Gastrodia elata	8.040
	SRR5643514	five period of Gastrodia elata	6.080
	SRR5643515	five period of Gastrodia elata	6.140
	SRR5643524	five period of Gastrodia elata	5.470
	SRR5643525	five period of Gastrodia elata	4.910
	SRR5643528	five period of Gastrodia elata	6.150
	SRR5643658	five period of Gastrodia elata	6.750
	SRR5643659	five period of Gastrodia elata	10.370
	SRR5643660	five period of Gastrodia elata	9.910
	SRR5643661	five period of Gastrodia elata	8.880
	SRR5643662	five period of Gastrodia elata	7.060
	SRR5643663	five period of Gastrodia elata	7.900
	SRR5643664	five period of Gastrodia elata	6.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.940
SRP279888	Gastro	Gastrodia elata tuber	3.84
	Juven	Juvenile tuber	5.94
	Mother_Gastro	Mother tuber of Gastrodia elata	5.80
	Mother_Juven	Mother tuber of Juvenile	5.39