Detail information of GWHGAAEX015714/evm.TU.scaffold_7.162
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310818309|ref|YP_003950667.1| | 1.00E-24 | hypothetical protein STAUR_1036 [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG3006 | 3.00E-109 | Transthyretin and related proteins |
| nr | gi|672144797|ref|XP_008796302.1| | 2.88E-147 | PREDICTED: uric acid degradation bifunctional protein TTL-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9LVM5|TTHL_ARATH | 9.00E-110 | 5-hydroxyisourate hydrolase |
| trEMBL | tr|M0SYC0|M0SYC0_MUSAM | 2.00E-138 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P13910_001} |
| TAIR | AT5G58220 | 3.00E-109 | transthyretin-like protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 7279206 | 7299351 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015714
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09349.9 | OHCU_decarbox | 10 | 150 | 4.70E-27 |
| PF00576.20 | Transthyretin | 200 | 321 | 4.50E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13484 | TTHL | Metabolic pathways | map01100 |
| Purine metabolism | map00230 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006144 | Biological Process | purine nucleobase metabolic process |
| GO:0033971 | Molecular Function | hydroxyisourate hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.560 |
| SRR2545915 | Juvenile tuber | 17.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.430 |
| SRR5643514 | five period of Gastrodia elata | 25.020 | |
| SRR5643515 | five period of Gastrodia elata | 26.110 | |
| SRR5643524 | five period of Gastrodia elata | 23.350 | |
| SRR5643525 | five period of Gastrodia elata | 45.180 | |
| SRR5643528 | five period of Gastrodia elata | 41.850 | |
| SRR5643658 | five period of Gastrodia elata | 43.900 | |
| SRR5643659 | five period of Gastrodia elata | 20.140 | |
| SRR5643660 | five period of Gastrodia elata | 21.100 | |
| SRR5643661 | five period of Gastrodia elata | 20.590 | |
| SRR5643662 | five period of Gastrodia elata | 22.030 | |
| SRR5643663 | five period of Gastrodia elata | 20.910 | |
| SRR5643664 | five period of Gastrodia elata | 20.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.97 |
| Juven | Juvenile tuber | 20.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.09 | |
| Mother_Juven | Mother tuber of Juvenile | 15.48 |