Detail information of GWHGAAEX015717/evm.TU.scaffold_7.166
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0938 | 0 | Adaptor complexes medium subunit family |
| nr | gi|695005293|ref|XP_009389091.1| | 0 | PREDICTED: AP-2 complex subunit mu [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O23140|AP2M_ARATH | 0 | AP-2 complex subunit mu |
| trEMBL | tr|M0S7A1|M0S7A1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P12100_001} |
| TAIR | AT5G46630 | 0 | Clathrin adaptor complexes medium subunit family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 7386726 | 7420783 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015717
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00928.20 | Adap_comp_sub | 167 | 438 | 8.20E-87 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11826 | AP2M1 | Endocytosis | map04144 |
| Endocrine and other factor-regulated calcium reabsorption | map04961 | ||
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0030131 | Cellular Component | clathrin adaptor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.730 |
| SRR2545915 | Juvenile tuber | 67.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 53.610 |
| SRR5643514 | five period of Gastrodia elata | 54.610 | |
| SRR5643515 | five period of Gastrodia elata | 59.080 | |
| SRR5643524 | five period of Gastrodia elata | 54.960 | |
| SRR5643525 | five period of Gastrodia elata | 50.410 | |
| SRR5643528 | five period of Gastrodia elata | 62.400 | |
| SRR5643658 | five period of Gastrodia elata | 52.870 | |
| SRR5643659 | five period of Gastrodia elata | 57.830 | |
| SRR5643660 | five period of Gastrodia elata | 60.420 | |
| SRR5643661 | five period of Gastrodia elata | 63.810 | |
| SRR5643662 | five period of Gastrodia elata | 63.550 | |
| SRR5643663 | five period of Gastrodia elata | 58.100 | |
| SRR5643664 | five period of Gastrodia elata | 57.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 53.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 53.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 51.28 |
| Juven | Juvenile tuber | 42.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.80 | |
| Mother_Juven | Mother tuber of Juvenile | 50.78 |