Gene detail

Detail information of GWHGAAEX015721/evm.TU.scaffold_7.174

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|538397169\|ref\|YP_008518742.1\|	4.00E-32	2OG-Fe(II) oxygenase superfamily protein [Variovorax paradoxus B4]
KOG	KOG0143	2.00E-146	Iron/ascorbate family oxidoreductases
nr	gi\|672197552\|ref\|XP_008777097.1\|	1.14E-173	PREDICTED: gibberellin 20 oxidase 1-D-like [Phoenix dactylifera]
Swissprot	tr\|O04707\|GAO1A_WHEAT	1.00E-163	Gibberellin 20 oxidase 1-A
trEMBL	tr\|B9R9J8\|B9R9J8_RICCO	4.00E-164	Gibberellin 20-oxidase, putative {ECO:0000313\|EMBL:EEF51475.1}
TAIR	AT4G25420	2.00E-146	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	7700293	7702098	-

Transcript Sequence
>GWHTAAEX015721 CTACAAACACCTATATAACAAGAGCTTGCACTGAAGATTTTAGACTCCCAAGATTCCATGTATTTTTGCTCCTCCTTCCTCAACCACAAATCTCCCATTTACCATCACAACCAGCTCTAGCCAACAGCCATGGTGTGCTCGTCGGAGTTCGACGCAGCCTTCCTGAGCCGCCAGCCGACCATCCCGTCCCAATTCATATGGCCGGAGTCGGAGAAGCCGACGCCGGAATCCTCTGAGGAGCTCCCGGTCCCGCTCGTCGACCTCGCGCGGTTCATCTCCGGCGGCGCGGAATCGGCGGAGGAGGTCGCCGCGCTCGTCCGCTCGGCCTGCTCGACGCACGGCTTCTTCCAGGTTGTGAACCACGGCATCCCGCCGGAGCTCGTCGCCGGCGCCCACCGTTATGCCGGCTCGTTCTTCTCGCTGCCGCTCCACGAGAAGCAGCGGGCGCAGCGGCGGCCCGGCGAGATCTGCGGCTACGCCAGCAGCTTCACCGGCCGCTTCTCCTCCAGCCTCCCCTGGAAGGAAACCCTCTCCCTCCGCTTCTCCCCTTCCTCCTCCCTCCACTTCCCGAACTCCTTCGACCACCCCGGCTTCGGGTTGGCATTCCGTCGAACACCTTGCGAGTACTGTTGCCGCTCCCCCTTGATTCATGCGCTGATTGTGTGTGCGTGCCATGTTGTTAATTGCAGGGAGGTCTGCCAGGAGTACTGCGAGGCGATGTGCAAGCTTTCGCTGGAGATATTGGAGGTGCTGGGGATGAGCCTGGGAGTGGGGAAAGCCCATTTCAGGGATTTCTTCAGAGCCAATGATTCAATAATGAGGCTCAATTACTACCCTCCTTGCCAGAAGCCGGATCAGACACTGGGAACCGGCCCTCACTGCGATCCCACCTCACTCACCATTCTCCATCAGGACCATGTGGGCGGCCTTCAGGTCTTCGCCGACGGCAGATGGCGCACCATCACCCCCATCGTCCACGCTTTCGTCGTCAATATCGGCGATACTTTCATGGCGCTGTCGAATGGGAGATACAAGAGCTGCCTGCACAGGGCGGTGGTGAACAGAGAGGAGGCGAGGAAGTCGCTGGCCTTCTTTCTGTGCCCGGAGATGGAGAAGGTGGTCAGACCGCCGGTCGGGTTAGTTGACCCGGACCACCCTCGGGTTTATCCGGACTTCACCTGGTCCGCTCTGCTCGAGTTCACGCAGAAGCATTACCGGTCTGACATGAAGACGCTTGATGCCTTCGCTAGGTGGATTCAAGCCCCACTTCCCTCCTGATTTTGTTCATTGCCCCCTATTTTTTTTGTTTATTTTATTATATTTTTGAGAGATTTTTGAGTGTAGACGTTGACAATAAATTCTATGATTATGTTTCCTTATCAATAAATTCCCTTTTTTTATTGATAATGATGTGGGAGAGTTACAAACACAAATGGAAAAGTGCTAAAATATCAATTTGGATTAAACAAGTGTTGCTGATTTGCTCTAAAAGAGCAACTTTTTTTCTTTTTGTTTTGTAAATCGGATGCGGTCGGGCAAGTGGGAGAGGTGAGCAGCTCGTTCAATTCGAAAAGCGGAGAAGAAGGGAGGACCATTGAACAGAATGGGTGATGTTTCCTGGCTGCAATTCCCCTGAAGAGTTCAGATCCCTGCGAATCGGGACCGCTAATTCACCTGAATAATTCATGCTTTTTAATATGAGATGCTTATCTGGGC

Network for GWHGAAEX015721

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.5	DIOX_N	40	142	2.10E-25
PF03171.19	2OG-FeII_Oxy	227	325	1.10E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05282	E1.14.11.12	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.360
SRP064423	SRR2545915	Juvenile tuber	0.610
SRP108465	SRR5643513	five period of Gastrodia elata	5.390
	SRR5643514	five period of Gastrodia elata	1.440
	SRR5643515	five period of Gastrodia elata	4.630
	SRR5643524	five period of Gastrodia elata	2.100
	SRR5643525	five period of Gastrodia elata	1.310
	SRR5643528	five period of Gastrodia elata	11.590
	SRR5643658	five period of Gastrodia elata	4.420
	SRR5643659	five period of Gastrodia elata	7.330
	SRR5643660	five period of Gastrodia elata	5.090
	SRR5643661	five period of Gastrodia elata	5.950
	SRR5643662	five period of Gastrodia elata	4.340
	SRR5643663	five period of Gastrodia elata	2.620
	SRR5643664	five period of Gastrodia elata	2.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.680
SRP279888	Gastro	Gastrodia elata tuber	1.31
	Juven	Juvenile tuber	2.78
	Mother_Gastro	Mother tuber of Gastrodia elata	16.32
	Mother_Juven	Mother tuber of Juvenile	17.58