Detail information of GWHGAAEX015724/evm.TU.scaffold_7.184
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672168361|ref|XP_008804183.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9M9X9|PPR18_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g06710, mitochondrial (Precursor) |
| trEMBL | tr|F6I3S9|F6I3S9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61597.1} |
| TAIR | AT1G06710 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 8129789 | 8163393 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015724
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 187 | 204 | 0.22 |
| PF01535.19 | PPR | 220 | 249 | 0.03 |
| PF01535.19 | PPR | 263 | 278 | 0.5 |
| PF13041.5 | PPR_2 | 284 | 332 | 2.30E-08 |
| PF13812.5 | PPR_3 | 350 | 400 | 7.50E-06 |
| PF01535.19 | PPR | 438 | 461 | 0.0024 |
| PF13041.5 | PPR_2 | 467 | 512 | 3.60E-16 |
| PF13041.5 | PPR_2 | 533 | 582 | 3.70E-18 |
| PF12854.6 | PPR_1 | 618 | 648 | 4.80E-07 |
| PF13041.5 | PPR_2 | 654 | 699 | 1.10E-11 |
| PF13041.5 | PPR_2 | 724 | 773 | 4.50E-17 |
| PF12854.6 | PPR_1 | 790 | 823 | 2.40E-10 |
| PF01535.19 | PPR | 867 | 890 | 0.041 |
| PF01535.19 | PPR | 904 | 933 | 0.0015 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.330 |
| SRR2545915 | Juvenile tuber | 8.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.960 |
| SRR5643514 | five period of Gastrodia elata | 4.380 | |
| SRR5643515 | five period of Gastrodia elata | 3.970 | |
| SRR5643524 | five period of Gastrodia elata | 3.400 | |
| SRR5643525 | five period of Gastrodia elata | 4.180 | |
| SRR5643528 | five period of Gastrodia elata | 3.030 | |
| SRR5643658 | five period of Gastrodia elata | 5.860 | |
| SRR5643659 | five period of Gastrodia elata | 5.260 | |
| SRR5643660 | five period of Gastrodia elata | 6.040 | |
| SRR5643661 | five period of Gastrodia elata | 5.000 | |
| SRR5643662 | five period of Gastrodia elata | 4.500 | |
| SRR5643663 | five period of Gastrodia elata | 4.290 | |
| SRR5643664 | five period of Gastrodia elata | 5.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.62 |
| Juven | Juvenile tuber | 8.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.66 | |
| Mother_Juven | Mother tuber of Juvenile | 5.78 |