Detail information of GWHGAAEX015726/evm.TU.scaffold_7.187


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743814861|ref|XP_010930173.1|9.52E-101PREDICTED: uncharacterized protein LOC105051424 [Elaeis guineensis]
trEMBLtr|M0RLI0|M0RLI0_MUSAM1.00E-89Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P26060_001}
TAIRAT1G543808.00E-54spliceosome protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000581931178227015+
Transcript Sequence

Network for GWHGAAEX015726

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04938.11SIP11623605.10E-64
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13130GEMIN2, SIP1 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.960
SRR2545915Juvenile tuber6.890
SRP108465SRR5643513five period of Gastrodia elata12.050
SRR5643514five period of Gastrodia elata11.320
SRR5643515five period of Gastrodia elata8.780
SRR5643524five period of Gastrodia elata11.290
SRR5643525five period of Gastrodia elata4.770
SRR5643528five period of Gastrodia elata6.150
SRR5643658five period of Gastrodia elata5.330
SRR5643659five period of Gastrodia elata11.030
SRR5643660five period of Gastrodia elata9.760
SRR5643661five period of Gastrodia elata10.760
SRR5643662five period of Gastrodia elata9.540
SRR5643663five period of Gastrodia elata9.740
SRR5643664five period of Gastrodia elata9.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.850
SRR6049655Rhizomagastrodiae_C368-T10_good_113.020
SRR6049656Rhizomagastrodiae_C368-T07_good_113.190
SRR6049657Rhizomagastrodiae_C368-T07_good_111.100
SRR6049658Rhizomagastrodiae_C368-T04_good_114.250
SRR6049659Rhizomagastrodiae_C368-T04_good_114.390
SRR6049660Rhizomagastrodiae_C368-T01_good_111.390
SRR6049661Rhizomagastrodiae_C368-T04_good_114.970
SRR6049662Rhizomagastrodiae_C368-T01_good_115.170
SRR6049663Rhizomagastrodiae_C368-T01_good_113.130
SRR6049664Rhizomagastrodiae_C368-T10_good_114.240
SRR6049665Rhizomagastrodiae_C368-T10_good_114.240
SRP279888GastroGastrodia elata tuber 13.69
JuvenJuvenile tuber12.91
Mother_GastroMother tuber of Gastrodia elata 11.49
Mother_JuvenMother tuber of Juvenile 13.52