Gene detail

Detail information of GWHGAAEX015729/evm.TU.scaffold_7.189

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|113476076\|ref\|YP_722137.1\|	8.00E-67	isochorismatase hydrolase [Trichodesmium erythraeum IMS101]
nr	gi\|743814944\|ref\|XP_010930195.1\|	5.70E-126	PREDICTED: uncharacterized protein LOC105051440 [Elaeis guineensis]
Swissprot	tr\|Q8S8F9\|NIC1_ARATH	6.00E-111	Nicotinamidase 1 {ECO:0000305}
trEMBL	tr\|M0T6E5\|M0T6E5_MUSAM	1.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P12470_001}
TAIR	AT2G22570	6.00E-88	nicotinamidase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	8273120	8291842	-

Transcript Sequence
>GWHTAAEX015729 TTTGGCTGGCGTGAATTGTTTATATTGATAGAGAGAGGGAGCGTTCTATGGGGTCGGAAAAGACGATGATGGATGCCGTGAGAGAGGAAGCTCCTCTTGATGTGGAAGAAGATTTCCTTCCTGCACTGGAGATGGAACGAGGAAGGGTTGTTGGCCTTGTTCTCGTTGACATAATTAATGGATTCTGCACCGTCGGAGCTGGCAACCTCGCTCCAACTAAACCTAATAAACAAATATCCTCGATGGTGGAGGAGGCATCAAGGATCTCTAGGGCATTTTGTGAGAAGAACTGGCCTGTCTTTGCTTTTCTTGACTCTCACTACCCAGATAGGCCTGAGCCTCCTTACCCCCCTCATTGCATTATTGGCTCTGGAGAAGAAAATTTTGTACCAGCTTTACAGTGGTTAGAAAAGGTTCCAAATTTGACATTGAAGCGTAAGGATTGCATTGATGGATTCATTTGTTCAATGGAGAAGGATGGTTCTAATATATTTGTCAACTGGGTGAAAGGAAATGGCATCAATATTGTTTTAGTACTTGGCATATGCACCGATATTTGTGTTTTGGACGTCACTTGCTCTATTTTGTCAGCTCGAAATACTGGTCACATTCCACCACTGGAAGATGTAGTGGTTTATTCACATGGCTGTGCAACGTATGATCTTCCAAGTCATATCGCTAGAAATATCAAAGGAGCATTGGCTCATCCTCAGGAATTGCTTCAGCACATGGGACTTTACATAGCCAAGGGAAGAGGAGCTAGGATTGTGAACAATATATCCCATGCTTTCCATGTTTTGGGATCATTATGGGTGCTGACACATGCACATGAACGCTCCAGGTATGCCATTGATGGTTCCTTGTCATGATTTGTTTTAGTGGTTGGCATCGTGAGTCGAGCTAGTGACATTTGATGCACGGGTATGGGTTTTAGCGATTTGCCTTCGCTTCACATGCCATCGTTTGTAGAAGATTTGGCTGGTAATGTTGATTTGAGCATTTTAATTTTTTTATAATTTTATACTGGCTGTCCAGTGTTCCCACAAAAGATTTTATATTTAAATATATTATAGTTTATTGTGCGCCACTGATTGGGCTGGGTTCAAGTCGAGTTCGAGCGAGTCAGCTTATACTCGAACTCGAAATTTTTGAATTGAGCCCAACTCTAACTTGACTCGAACTCCGTTGAGTCAAATTCAAATAAAAAAAGTTTGAGTTTGAGCTTACTCAAATAATTTTTGAGTCGAACTCGAACTATATTAAATAAACTAACTTGTATATAGCTTGAAGAAATGCTTTGGCACACTGATAATTAGTTGATTTTATAATAATCAAATTCAACCCGTCTCGAGGAGATTTGAACCTAGGGCTAAACAATGAAAATTAGGCACCTTAACTATACCTTAACCACTAAGTCAGATAAGGAGCTTTGTAATTTGTATATCTTTTATTATTTTATATATTTTGTGTGATTTGGATCTTGTTCAAATCGAGTCGAGCCCAGTTTGAACTCAACTCAATTTGGGTTCAAGGCGAGCCATTCAACTTAACTTGTCTCAAAATTCGATTTGACTCAAAATTTGAGCGAGTTTCGAGTTTTTGGTAAAAATGTTGGCCCGAATCAAGGGGTTATGGGTGTGACTCTTAAGCACGCCTAGATGATGAGCGACCTTGTTCAAGGAAAGAGTGCTTGGGCGAGTCGAAGCAACATGCAGTAATCGCTATTGTCATTGTGCCCAAATGCGCTAGAAGGATCCACCTTGCGAAAGTACTTTAGTGATTCCTCAGCATTTGATGCTTGAGCGTGCTCGAGCATGGAGTGTTCTGTTCAATAATGAATATGCCCGCCTAGACGCAAGTAGGTGCACCTAGGCGCAGTCAAGTTAGGCATTGATCCACTGATTAGTTGGATTGCCCTCAAGTGCGTTCAAACTTTCGCTCAAGCGTGCATAAACAAACTAGATTAGATGCTCCACATGCAGTAAATTAATGGCAGAGCATATGGCTTGTGCCCAGACGCACATGCGAATACATGTTGGCTCAGGATATGGTTTGGGACAATCGTTGTGATGTACCTATGCATGTGTAATCACATGCCCATGCGGGTCACAACAGAAACTACAAATGCGTGCATTTTGGCTGTAGTAGAGTGAAAATTTTGTAAATTTGTAAATTCCTCTTTTTCTGTAATGAAACGTTTTTTGATGGTGTCAACTTCATGATTATTTCATGATATAAGTATTCCATAT

Network for GWHGAAEX015729

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00857.19	Isochorismatase	36	209	9.50E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	98.450
SRP064423	SRR2545915	Juvenile tuber	68.870
SRP108465	SRR5643513	five period of Gastrodia elata	42.080
	SRR5643514	five period of Gastrodia elata	44.140
	SRR5643515	five period of Gastrodia elata	36.600
	SRR5643524	five period of Gastrodia elata	43.160
	SRR5643525	five period of Gastrodia elata	57.200
	SRR5643528	five period of Gastrodia elata	54.340
	SRR5643658	five period of Gastrodia elata	66.620
	SRR5643659	five period of Gastrodia elata	25.670
	SRR5643660	five period of Gastrodia elata	31.600
	SRR5643661	five period of Gastrodia elata	24.180
	SRR5643662	five period of Gastrodia elata	22.890
	SRR5643663	five period of Gastrodia elata	26.290
	SRR5643664	five period of Gastrodia elata	29.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	86.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	112.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	58.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.790
SRP279888	Gastro	Gastrodia elata tuber	30.75
	Juven	Juvenile tuber	29.78
	Mother_Gastro	Mother tuber of Gastrodia elata	42.72
	Mother_Juven	Mother tuber of Juvenile	45.08