Gene detail

Detail information of GWHGAAEX015730/evm.TU.scaffold_7.191

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2166	Cullins
nr	gi\|719965652\|ref\|XP_010257131.1\|	PREDICTED: cullin-3A-like [Nelumbo nucifera]
Swissprot	tr\|Q9ZVH4\|CUL3A_ARATH	Cullin-3A
trEMBL	tr\|A5C158\|A5C158_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN72935.1}
TAIR	AT1G26830	cullin 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	8353475	8381908	+

Transcript Sequence
>GWHTAAEX015730 GAGAAATAAAAAGTTTGGACTGCAAGTTTGCGTTTGTGGCAGCAGCCAAGAATTAGAGTGGGCGAACAGATCACCGGAAATCAGATCTCAAATGTAAAAAGTTCATCATCTCGAAAGAAAAATTGCTGACCGTGACTACTCGGATTCTTCGACGGAGAGAAACGATTTCAGTGGGATATTTACATATCGATAATTGCAAAAGCGATTATTTGTTTATTTCCATTTACAGCCTTTTCACAAAACTCCCTTCCTCTAGGATTTTTTATTGTTGACAACCATCTGCTCATTTATCCTCTTCATCCCTTACGTGTCTCCGAAGCTCTGCTTCTTCATCTCAGCCGAGCCTTGGAAACCCTAGCCCTCGATATTGGCCATCGAATTCTTGAGGAGTGCTCCAATTTGATTCGAATCGGTACCCCAATTCTTATATGCTTGGTCGTTCTCCATTTTTGCAACGTCACAGGTGTTCTTGTCTGAAGTGGGAATATGAGCAGTCAGAAGAAAAGAAACTTCAAGATTGAGGCCTTCAAGCACAGGGTGGAGGTCGACCCCAAATATGCCGAGAAGACTTGGAAAATTCTCGAGCATGCTATTCATGAGATTTACAATCATAACGCCAGTGGCCTTAGCTTTGAGGAGCTCTACAGGAATGCTTACAATATGGTACTGCACAAATATGGCGAGAAGCTGTACGCAGGACTCGTGGCCACAATGACTTGGCATCTTAAGGAAATGTCCAAATCCATTGAGTCTGCTCAGGGCGGCCTCTTTCTGGAAGAGCTCAACAGAAAATGGGCTGATCACAACAAGGCGTTGCAGATGATCCGCGACATACTGATGTACATGGATAGAACCTTTGTCCCCAGCTCTCACAAGACACCCGTCCATGAGCTTGGATTGAATCTGTGGAGGGACAATATCGTTCGCTCCAGTAAGATCCAAACCAGGCTCGTCTTCACCCTCCTCGAGCTCATTCAGAAAGAGCGAACTGGCGAGGTTATAAACCGCGGCCTGATGCGGAATGTAACAAAGATGCTGATGGATCTCGGTTCCCTTGTGTATCAAGAGGATTTCGAGAAGCCCTTTTTGGAAGTTTCGGCTACCTTTTACAGCGTGGAGTCGCAGAAGTTCATTGAATGCTGCGATTGTGGGGAGTATTTGAATAAAGCTGAGAGACGGCTTAATGAAGAGATGGAGAGGGTTTCCCAATATCTGGACTTGAAGACAGAATCAAAGATAACGCATGTGGTTGAGACGGAGATGATTGCAAATCACATGCAGAGGTTAGTCCACATGGAGAACTCCGGCCTCGTGAACATGCTCGTGGATGACAAGTTTGATGATCTCAGCAGAATGTACAACTTGTTTCGCCGGGTTCCGGACGGACTCTCAACCATCAGGGAGGTGATGACCTCCCATCTCCGAGAAACTGGCAAGCAGCTGGTGACTGATCCGGATAAACTCAGGGATCCTGTTGACTTTGTCCAGCGCCTGCTCAGTGAGAAGGACAAGCACGACAAGATCATAAGTGCCGCATTCAACAACGACAAGACCTTCCAAAATGCTCTCAACTCTTCGTTCGAGTATTTTATAAATCTGAATAGTAGATCGCCGGAATTCATCTCGCTGTACGTCGACGACAAGCTTCGGAAGGGCCTCAAGGGGGTCAGCGAAGAGGATGTGGAGGTCGTCCTTGACAAAGTCATGATGCTGTTCCGCTACCTCCAAGAGAAAGACGTCTTCGAGAAGTACTACAAGCAACACCTGGCCAAGCGGCTCCTCTCCGGGAAGACTGTTTCCGATGATGCCGAGAGAAGCTTGATAGTGAAGCTCAAGACAGAGTGCGGCTATCAGTTTACCTCCAAGCTGGAGGGTATGTTCACCGACATGAAGACCTCACAGGACACAATGCAGGGGTTCTACGCCAGCCTATCAGCTTCTTCGGACTCTTCTTCTGTAGACGGTGGCCCCAGCCTGGCTGTTCAGGTCCTCACCACCGGGTCCTGGCCAACCCAACCCATTGCCCCGTGCAATCTCCCGTCAGAGATTCTTGGCATGTGTGAAAGGTTTCGGAATTATTATTTGGGCACCCACACTGGGAGGAGGCTGACATGGCAGACAAACATGGGCACCGCCGACCTGAAGGCCACCTTTAGCAAGAATCAGAAGCATGAGCTCAATGTGTCCACATACCAAATGTGCATTCTGATGCTGTTCAATTCCTCCGATCGATTGACTTACAAGGAGATAGAGCAGGCGACGGAGATCCCGGCATCCGATCTGAAACGCTGCCTCCAGTCTCTGGCATGCGTGAAGGGAAAGAACGTGCTCGGGAAGGATCCCATGAGCAAGGATATAGCAGAGGATGACGAGTTTGTGGTGAACGACAAGTTCTTGAGCAAGTTCTTCAAGGTGAAGATTGGGACGGTGGTGGCGCAGAAGGAGTCCGAGCCGGAGAAACAGGAGACTCGCCAGAGGGTGGAGGAGGACCGGAAGCCGCAGATTGAGGCCGCCATTGTGAGGATAATGAAGTCCAGGCGAGTTCTGGACCACAACAACATCGTGGCCGAGGTCACAAAGCAGCTGCAGTCCAGGTTCCTTCCTAATCCCGTGGTCATTAAGAAGCGGATCGAGTCCCTCATTGAAAGGGAGTTTTTGGAGAGGGACAAGGCTGACCGTAAATTGTACAGGTATCTTGCCTAATAAACAAATTTTCTTTTATTTCTCTGGATCCCAATTTGAATTTGTCTGTTTATCATGTATTTTGCCATCATATTTTCTTTGCGCTGAATCGATCTCTTTCTCAGGAGCCGCTTCTCCTTCTCTTCTCATTTTTACTTGTTTGCTAAGAGAGAAAGAACTGGCAATTCTCTGTTAAGTTTCATTCCCACAGGTTTTTTCTTTACAAATCATCACCCATCATCTAGGAGGTCTTTGCACTAGTATTTATGAATCTTCATTGAGCC

Network for GWHGAAEX015730

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.21	Cullin	29	636	2.10E-222
PF10557.8	Cullin_Nedd8	668	729	3.10E-26

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K03869	CUL3	Ubiquitin mediated proteolysis	map04120
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0031625	Molecular Function	ubiquitin protein ligase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.300
SRP064423	SRR2545915	Juvenile tuber	25.550
SRP108465	SRR5643513	five period of Gastrodia elata	31.620
	SRR5643514	five period of Gastrodia elata	33.740
	SRR5643515	five period of Gastrodia elata	32.990
	SRR5643524	five period of Gastrodia elata	32.760
	SRR5643525	five period of Gastrodia elata	34.920
	SRR5643528	five period of Gastrodia elata	37.290
	SRR5643658	five period of Gastrodia elata	42.540
	SRR5643659	five period of Gastrodia elata	32.570
	SRR5643660	five period of Gastrodia elata	33.860
	SRR5643661	five period of Gastrodia elata	32.380
	SRR5643662	five period of Gastrodia elata	33.040
	SRR5643663	five period of Gastrodia elata	31.780
	SRR5643664	five period of Gastrodia elata	29.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.730
SRP279888	Gastro	Gastrodia elata tuber	21.23
	Juven	Juvenile tuber	24.94
	Mother_Gastro	Mother tuber of Gastrodia elata	26.76
	Mother_Juven	Mother tuber of Juvenile	24.17