Detail information of GWHGAAEX015740/evm.TU.scaffold_7.201
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0242 | 4.00E-95 | Kinesin-like protein |
| nr | gi|743829269|ref|XP_010934100.1| | 2.18E-167 | PREDICTED: armadillo repeat-containing kinesin-like protein 3 [Elaeis guineensis] |
| Swissprot | tr|F9W301|KPSS1_ORYSJ | 1.00E-30 | Kinesin-1-like protein PSS1 {ECO:0000303|PubMed:21282525, ECO:0000312|EMBL:DAA34941.1} |
| trEMBL | tr|A0A078I2R9|A0A078I2R9_BRANA | 4.00E-145 | Kinesin-like protein {ECO:0000256|RuleBase:RU000394} |
| TAIR | AT1G20060 | 4.00E-95 | ATP binding microtubule motor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 8879664 | 8973921 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015740
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00225.22 | Kinesin | 125 | 415 | 9.60E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007018 | Biological Process | microtubule-based movement |
| GO:0008017 | Molecular Function | microtubule binding |
| GO:0003777 | Molecular Function | microtubule motor activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.760 |
| SRR2545915 | Juvenile tuber | 3.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.970 |
| SRR5643514 | five period of Gastrodia elata | 1.970 | |
| SRR5643515 | five period of Gastrodia elata | 2.030 | |
| SRR5643524 | five period of Gastrodia elata | 2.410 | |
| SRR5643525 | five period of Gastrodia elata | 0.750 | |
| SRR5643528 | five period of Gastrodia elata | 2.750 | |
| SRR5643658 | five period of Gastrodia elata | 3.280 | |
| SRR5643659 | five period of Gastrodia elata | 3.620 | |
| SRR5643660 | five period of Gastrodia elata | 4.320 | |
| SRR5643661 | five period of Gastrodia elata | 4.010 | |
| SRR5643662 | five period of Gastrodia elata | 3.190 | |
| SRR5643663 | five period of Gastrodia elata | 3.840 | |
| SRR5643664 | five period of Gastrodia elata | 2.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.79 |
| Juven | Juvenile tuber | 2.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.97 | |
| Mother_Juven | Mother tuber of Juvenile | 4.85 |