Gene detail

Detail information of GWHGAAEX015746/evm.TU.scaffold_7.208

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743775323\|ref\|XP_010918040.1\|	PREDICTED: protein TIC110, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q8LPR9\|TI110_ARATH	Protein TIC110, chloroplastic (Precursor)
trEMBL	tr\|M0RNL4\|M0RNL4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P01840_001}
TAIR	AT1G06950	translocon at the inner envelope membrane of chloroplasts 110

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	9121132	9161314	-

Transcript Sequence
>GWHTAAEX015746 GGCGGGATTGCATTGCCGACACAATCGAACGTCTTATAGGGCCGCAAGAACATTCATCTGTGTCCGTACGGCCACCCCATAACTGGGATGTTCGTTTCCTCTATTCATTATTAGCAGCAAGGAGTGGGCATCTACCATGGAGCTCTCTCTTTCAACTCCCACCTCTTCCTCACACTCTCGCCTCCTCTTCTTAACTTTAAACCCTAATCCTATCTGCATTCACTCTGTCAAAGCCACTCGCATCTCCCTCCGCCGCCGCTTTCGATTCTCGGCTTCCTCAGATGCGGCAGAGGCAGTTCGTCCAAGCGAACCCTCATTGTTCGGCTTTCCAAAGAAGCTCACGGCCCAGCAGAAAATTGTGGATGTTTTGCCACCGCCAGCGAGGTTAGCCAGTTGCGTTGTGCTTACGGGAACAGCTCTGGCTGCTGGTTTTGGATTAGGGTTTCGCTTTGGGGGCGGTCGGGCTGCGGGGCTTGGAGGAGCTGCGATTCTCGGTCTTGCTGCTGGTGCCGCGGCTTTTGGAATTAATTCGAGTGCTCCGGAAGTTGCGGCAGTGAATCTGCGTAATGCGTTGGCTGGTTATGTTGACCCCACGGAACTGAAGAAGGAGGTGATTGAAGGCATTATCCAAAAATATGGCATTAGTAGACATGATGAGGCCTTCAGGGAAGCACTCCGTGATTTGTATAGCAGGTTTGTTTCCTTTGTCATCCCACCTGGAGCTGAAAATCTTAAGGGGAATGAGGTCGAGACCATAATCAAATTCAAAACTGCGCTTGGTATTGATGATCCAGATGCTGCGTCTGTTCACATGGAGATTGGAAGACATATTTTTAGGCAACGTATGGAAACAGGAGACCGTGAAGCTGATGCAGAGCAGCGTCGTGCATTTCAAAAACTTGTTTATATTTCCACTCTTGTCTTTGGTGAAGCATCAAAATTTCTCCTACCTTGGAAGCGTATATTCAAAGTCACCGATGCCCAGGTTGACGTTGCTGTACGTGACAATGCTCAGAGACTTTTTGCCTTGAAATTGAATTCGATTGGCAGAGATATTGTTGACACACAACTTATTGATGCGAGATCTTCACAGCTCTTGTATCGTCTTTCAGACGAGATTGCTGCTGAAATGTTCAGAGAGCACACAAGAAAGCTGGCAGAAGTAAACATCGCCAGCGCAGTCAATGTTTTAAAGTCTCGAATGCAAGCGGGAAGAACTGCTCGAGTTGTGGAAGAGATTGAGAAAGTTTTGGCTTTAAATAATTTGCTTTTATGCTTAACTAAACATCCAGAGTCAAATAAATTTGTCCCTGGCGTTTCACCAATCTCATTAGTAGGTGGGGAATTTGACAGTGACAGAAAAATTGATGATCTAAAATTGCTTTTTAGAGCATATGCAGCCGAGTGTTTTCCAGATGGACTTCTTGAGGAACAAAAATTTGTTGCTTTGAACCAATTGAAGAATATATTTGGATTAGGCAACCGTGAAGCAGATGCGATACTGCTAGATATTACTGTTAAAGTCTATCGTAAGCGCCTTTCTCATGCTGTTTCTAGTGGTGATTTAGATGCAGCTTCAAGCAAGGCAGCATTTCTTCAAAATCTTTGCGAAGAACTGCATTTTGATCCTCAAAAGGCTAGCGAGATACATGAAGAAATTTATAGACAAAAGCTACTGCAGTTTGTTTCTGATGGTGAGCTCAGGGAGGAGGAGGTTTCTTCACTTCTTCGTATTAGAGTTCTCCTCTGTATACCTCAAGACACTGTTGATTCTGCACATGCAGATATTTGTGGTCGTTTATTTGAGAAGGTTGTTAAAGATGCGATCGCTTCAGGGGTTGACGGTTATGATGCTGACATCAGGGCATCTGTGAGGAAAGCCGCTCAGGGTTTACGCCTACCAAAGGATGCTGCCATGGCTATTGCTGGCAAGGCGGTCCGCAAGGTATTCTTAACCTATGTGCAGCTCTCAAAGGGGGCTGGCAATCAAATTGAAGCTGCAAAGGAACTTAAGAAGATGATTGCATTCAACACCTTGGTTGTTACTGAATTAATATTTGACATTAAAGGAGAGCCCATTACTAGAGATCCCATCGAAGTTGAGATTAATCCAACAGAGGTAGTAGACGAAGAGGAGTGGGAATCTCTGCAGACATTGCGAAAGTCGAGACCCACCAAAGCTCTTGAAGCAAAGCTGGGAAAGGGTGGCCAAACAGAAATAAATTTGAAGGATGATCTCCCGGAAAGGGATAGGGTCGAAATCTATAGAACATATCTTCTCTTCTGCCTTTCGGGAGAGGTGACTGTTGTTCCCTTCGGGGCTCAGATCACTACAAAGAAGGATGACTCGGAGTATCTTTTGCTGAATCAGCTCGGTGGAATACTTGGTTTGACCAGCAAAGAAATTGCGGAGATCCATAGGAGTCTAGCCGAGCAGGCGTTCATGAAGCAGGCTGAGGTGATTCTTGCCGACGGGCAGCTGACTAAATCTAAGATTGATCAGCTAAGCAAGGTTCAGAATCAAGTTGGATTGCCTGTTGAATATGCTCAGAAAGTAATCAAGAACATAACCACAACCAAAATGGCTGCGGCCATTGAGACTGCCGTCAGTCAAGGGAGGATAGGAATTCAGCAGGTTCGTGAACTGAAGGAAGCCAACGTTGATCTAGACAGCATGATATCGGTGCGTTTGCGCGAGAATCTATTCTTAAAAACGGTCGAGGAAATCTTTTCTTCAGGAACAGGTGTATTCGATGAAGTCGAGGTTTATGCCAATATCCCGTCTGATCTTAACCTAGATGCAGAGAAAGCCCGAGGCGTCGTTCAGGAGATCGCCATGCAGAAGCTGTCAAATTCACTTGTTCAGGCTGTGGCTTTGCTTCGCCAGAGGAACCGGGATGGAGTGGTTGCCTCTCTGAATGACATGTTGGCCTGTGACACTGCTGTGCCTTCTGAGCCCCTGCCTTGGTCTTCACCCGATGAGCTTGCTGATCTTTACTGCATATATCTGAAGAAGGTTCCCGAGACAGAGAGGCAGAAGCTTGATAGATTGCAGTTTCTTTTGGGAATCAGCGATTCTTCTGCTGCATTACTCAGAGACTCGGCAGAAAGAAGAACGCAGCCCATTGAAAACGAGGAAGAAGAGGTTTTCTTTTAGGTTCACATATTTATTTAAATTCTTTTTAAGCCATTTGATTTCAGTTAGTTTCTAGTAGTAAGCCCGGTGAAGCTGAGCAAAATGCATGCCTGTGCTAAAAGAAAATTTTGTAGTTTACTGTTCTTTTGAGGCATGTTATTATATAGTAGTATCATGTGCTTGTTTTTTCTGTTGTATATTCTCCCAAAAAACAGCAATTTGGGAATGCCTAGCCTTCTTTATTTTAGGCATTTGATTAGGAAGTGAAGATGAACCTTAAATATAAGGGGATAACCTTGAAGATTCCCTTTATTTAAAATATGAGGAAGATCATAAATTTGAGAATATAGGATCATTGTTCGCTGTTTTCAGCCTTGTGGTCATAGGAAATCTCACAAGGTGCTTTTAAAAAGAACAACGAAACAGAAAGAATGCTCGCGGCTCGGTGGGCCTAGTGGAGCAGTGTGGTGTAAGCCACAATGAAAAATTGTGTGGGAAACGATCAAAATGATAGGTTCTTGAGAGTAATATGTAGCACAAAGTGGGAGCATTATATTTGATGTGTTTAAGGAATTTGCATGTTCAGGATTGATCGTTTTGTTAAAAAGTAGTAAAGGCTTGAAAGTTTAATGTATGGTGTGGTTTTGTAGTCTTTCCAAATTTTGAATTTTTCATGTAAAACTTTTATTTGGATGGATGCATGTGTATGTGCTGTGATCTATATTTTATTGTACTTGTGA

Network for GWHGAAEX015746

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16940.4	Tic110	69	640	8.20E-264

Protein Sequence

>GWHPAAEX015746
MELSLSTPTSSSHSRLLFLTLNPNPICIHSVKATRISLRRRFRFSASSDAAEAVRPSEPSLFGFPKKLTAQQKIVDVLPPPARLASCVVLTGTALAAGFGLGFRFGGGRAAGLGGAAILGLAAGAAAFGINSSAPEVAAVNLRNALAGYVDPTELKKEVIEGIIQKYGISRHDEAFREALRDLYSRFVSFVIPPGAENLKGNEVETIIKFKTALGIDDPDAASVHMEIGRHIFRQRMETGDREADAEQRRAFQKLVYISTLVFGEASKFLLPWKRIFKVTDAQVDVAVRDNAQRLFALKLNSIGRDIVDTQLIDARSSQLLYRLSDEIAAEMFREHTRKLAEVNIASAVNVLKSRMQAGRTARVVEEIEKVLALNNLLLCLTKHPESNKFVPGVSPISLVGGEFDSDRKIDDLKLLFRAYAAECFPDGLLEEQKFVALNQLKNIFGLGNREADAILLDITVKVYRKRLSHAVSSGDLDAASSKAAFLQNLCEELHFDPQKASEIHEEIYRQKLLQFVSDGELREEEVSSLLRIRVLLCIPQDTVDSAHADICGRLFEKVVKDAIASGVDGYDADIRASVRKAAQGLRLPKDAAMAIAGKAVRKVFLTYVQLSKGAGNQIEAAKELKKMIAFNTLVVTELIFDIKGEPITRDPIEVEINPTEVVDEEEWESLQTLRKSRPTKALEAKLGKGGQTEINLKDDLPERDRVEIYRTYLLFCLSGEVTVVPFGAQITTKKDDSEYLLLNQLGGILGLTSKEIAEIHRSLAEQAFMKQAEVILADGQLTKSKIDQLSKVQNQVGLPVEYAQKVIKNITTTKMAAAIETAVSQGRIGIQQVRELKEANVDLDSMISVRLRENLFLKTVEEIFSSGTGVFDEVEVYANIPSDLNLDAEKARGVVQEIAMQKLSNSLVQAVALLRQRNRDGVVASLNDMLACDTAVPSEPLPWSSPDELADLYCIYLKKVPETERQKLDRLQFLLGISDSSAALLRDSAERRTQPIENEEEEVFF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009507	Cellular Component	chloroplast

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.470
SRP064423	SRR2545915	Juvenile tuber	18.900
SRP108465	SRR5643513	five period of Gastrodia elata	28.270
	SRR5643514	five period of Gastrodia elata	29.300
	SRR5643515	five period of Gastrodia elata	30.480
	SRR5643524	five period of Gastrodia elata	26.170
	SRR5643525	five period of Gastrodia elata	20.980
	SRR5643528	five period of Gastrodia elata	20.270
	SRR5643658	five period of Gastrodia elata	19.100
	SRR5643659	five period of Gastrodia elata	46.730
	SRR5643660	five period of Gastrodia elata	48.320
	SRR5643661	five period of Gastrodia elata	47.460
	SRR5643662	five period of Gastrodia elata	52.080
	SRR5643663	five period of Gastrodia elata	59.640
	SRR5643664	five period of Gastrodia elata	51.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.520
SRP279888	Gastro	Gastrodia elata tuber	49.42
	Juven	Juvenile tuber	48.51
	Mother_Gastro	Mother tuber of Gastrodia elata	22.70
	Mother_Juven	Mother tuber of Juvenile	43.81