Detail information of GWHGAAEX015751/evm.TU.scaffold_7.213
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672136165|ref|XP_008791769.1| | 0 | PREDICTED: probable linoleate 9S-lipoxygenase 4 [Phoenix dactylifera] |
| Swissprot | tr|Q43190|LOX14_SOLTU | 0 | Probable linoleate 9S-lipoxygenase 4 |
| trEMBL | tr|M0S5H6|M0S5H6_MUSAM | 0 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} |
| TAIR | AT3G22400 | 0 | PLAT/LH2 domain-containing lipoxygenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 9374778 | 9390758 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015751
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00305.18 | Lipoxygenase | 1 | 470 | 1.70E-201 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00454 | LOX2S | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Linoleic acid metabolism | map00591 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.760 |
| SRR2545915 | Juvenile tuber | 0.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.530 |
| SRR5643514 | five period of Gastrodia elata | 2.470 | |
| SRR5643515 | five period of Gastrodia elata | 3.600 | |
| SRR5643524 | five period of Gastrodia elata | 2.690 | |
| SRR5643525 | five period of Gastrodia elata | 4.770 | |
| SRR5643528 | five period of Gastrodia elata | 3.450 | |
| SRR5643658 | five period of Gastrodia elata | 6.340 | |
| SRR5643659 | five period of Gastrodia elata | 3.200 | |
| SRR5643660 | five period of Gastrodia elata | 2.690 | |
| SRR5643661 | five period of Gastrodia elata | 2.590 | |
| SRR5643662 | five period of Gastrodia elata | 3.190 | |
| SRR5643663 | five period of Gastrodia elata | 3.890 | |
| SRR5643664 | five period of Gastrodia elata | 4.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.89 |
| Juven | Juvenile tuber | 7.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.65 | |
| Mother_Juven | Mother tuber of Juvenile | 2.81 |