Detail information of GWHGAAEX015754/evm.TU.scaffold_7.216
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|124027750|ref|YP_001013070.1| | 1.00E-11 | 50S ribosomal protein L35Ae [Hyperthermus butylicus DSM 5456] |
| KOG | KOG0887 | 3.00E-65 | 60S ribosomal protein L35A/L37 |
| nr | gi|727431004|ref|XP_010487099.1| | 4.31E-65 | PREDICTED: 60S ribosomal protein L35a-1 [Camelina sativa] |
| Swissprot | tr|Q9C912|R35A3_ARATH | 9.00E-66 | 60S ribosomal protein L35a-3 |
| trEMBL | tr|B6VC50|B6VC50_VERFO | 2.00E-65 | 60S ribosomal protein L35a {ECO:0000313|EMBL:ACJ02349.1} |
| TAIR | AT1G74270 | 3.00E-65 | Ribosomal protein L35Ae family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 9502276 | 9508389 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015754
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01247.17 | Ribosomal_L35Ae | 12 | 106 | 7.50E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02917 | RP-L35Ae, RPL35A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 124.200 |
| SRR2545915 | Juvenile tuber | 219.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 373.000 |
| SRR5643514 | five period of Gastrodia elata | 466.510 | |
| SRR5643515 | five period of Gastrodia elata | 390.910 | |
| SRR5643524 | five period of Gastrodia elata | 459.210 | |
| SRR5643525 | five period of Gastrodia elata | 218.510 | |
| SRR5643528 | five period of Gastrodia elata | 256.850 | |
| SRR5643658 | five period of Gastrodia elata | 185.890 | |
| SRR5643659 | five period of Gastrodia elata | 342.190 | |
| SRR5643660 | five period of Gastrodia elata | 318.770 | |
| SRR5643661 | five period of Gastrodia elata | 352.830 | |
| SRR5643662 | five period of Gastrodia elata | 274.510 | |
| SRR5643663 | five period of Gastrodia elata | 288.240 | |
| SRR5643664 | five period of Gastrodia elata | 252.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 313.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 692.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 410.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 269.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 263.830 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 215.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 299.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 310.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 468.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 390.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 635.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 635.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 339.72 |
| Juven | Juvenile tuber | 259.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 207.04 | |
| Mother_Juven | Mother tuber of Juvenile | 206.17 |