Detail information of GWHGAAEX015755/evm.TU.scaffold_7.217
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1354 | 0 | Serine/threonine protein phosphatase 2A, regulatory subunit |
| nr | gi|743756739|ref|XP_010918432.1| | 0 | PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X3 [Elaeis guineensis] |
| Swissprot | tr|Q39247|2ABB_ARATH | 0 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform |
| trEMBL | tr|M0T4E5|M0T4E5_MUSAM | 0 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256|RuleBase:RU331113} |
| TAIR | AT1G17720 | 0 | Protein phosphatase 2A, regulatory subunit PR55 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 9523329 | 9564105 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015755
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0019888 | Molecular Function | protein phosphatase regulator activity |
| GO:0000159 | Cellular Component | protein phosphatase type 2A complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 117.210 |
| SRR2545915 | Juvenile tuber | 96.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 52.630 |
| SRR5643514 | five period of Gastrodia elata | 48.780 | |
| SRR5643515 | five period of Gastrodia elata | 45.450 | |
| SRR5643524 | five period of Gastrodia elata | 47.030 | |
| SRR5643525 | five period of Gastrodia elata | 69.870 | |
| SRR5643528 | five period of Gastrodia elata | 61.570 | |
| SRR5643658 | five period of Gastrodia elata | 82.460 | |
| SRR5643659 | five period of Gastrodia elata | 62.020 | |
| SRR5643660 | five period of Gastrodia elata | 64.890 | |
| SRR5643661 | five period of Gastrodia elata | 55.510 | |
| SRR5643662 | five period of Gastrodia elata | 63.290 | |
| SRR5643663 | five period of Gastrodia elata | 63.980 | |
| SRR5643664 | five period of Gastrodia elata | 69.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 67.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 58.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 76.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 71.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 81.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 71.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 69.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 53.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 46.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 46.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 74.65 |
| Juven | Juvenile tuber | 72.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.23 | |
| Mother_Juven | Mother tuber of Juvenile | 66.19 |