Gene detail

Detail information of GWHGAAEX015761/evm.TU.scaffold_7.226

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672160430\|ref\|XP_008799997.1\|	2.12E-120	PREDICTED: protein BREVIS RADIX [Phoenix dactylifera]
Swissprot	tr\|Q17TI5\|BRX_ARATH	5.00E-86	Protein BREVIS RADIX
trEMBL	tr\|M0SSL8\|M0SSL8_MUSAM	4.00E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P27560_001}
trEMBL	tr\|M0SSL8\|M0SSL8_MUSAM	2.00E-07	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P27560_001}
TAIR	AT1G31880	1.00E-72	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	9751639	9756735	+

Transcript Sequence
>GWHTAAEX015761 CCTTTTTCTTAACAATATATAATAAACGTATTTCTCCTCTGTTATATAAATCACATTCTCTTCTGTCATCGATCGATCGATCCCATTACCAGAACTATTTTTTGGAAGCTCTTCCTCTCCCGAACTACTTGGGGCAAGGAAAAAAGTCCGGATTTGCTCCGACACTGCTCAGAGCTGAATCTCTGCATTCTTTGGGGAAGCTGAAGGGACAGTTCCCGCCCGCATGTCAAAGCGTTTCCTTTTATTTTGACACTGATAAGAGGCAGCGCTGTGAGGGGAAGCAGATTTCTCGAAGTGGTGCGGTCACCGGCTGAGGAGACATGCTGGCGTGCATCGCGTGCGCGAAGCCGGAGCTGGAGGATGGTGGGGAAGATACGGCGCGTGCGGGGACACCGAGCAGAAAAGACAACGTCAAAAGCCTCAGTTCTCAGTTGAAGGATATGGTGCTGAAGTTTTCGGGGGCGTACCGCCAATGCAGGGGAGGCAGCGCGGCCTACTTCCGCCCCAGGTCCCATCAGCGCGACCCCGTCTTCGACGAAGATGAGGCGAGCGGCCGCTACGCATTTCTCTGCGCAGCCGCCGCCGCCTCGTCGTCATCGGCGGGGGACGCCTGGGACCTGCCAATGAGTGAGAGGGCGCCGCCTCCTTGTTCGGACACGGTTACGCAAGACGAAGGGGAGCCGGCCAGCAAGGAGTGGGTCGCCCAAGTTGAGCCCGGTGTCCACATTACCTTCCTCTCCCTGCCGGGCGGCTTCGGCAACGACCTCAAGCGCATTCGCTTCAGCCGGGAGATGTTCAACAAGTGGCAGGCGCAGAGGTGGTGGGGAGAGAACTACGACAGGATAATGGAGCTTTACAACGTCCAGAAATTCAGTCGACAGGCACTTCCCACTCCGCCCAGATCCGACGATGGCTGTACTGAGCACAGGGAATCATTCTACTCGAGAACAGGTTCAACAAGAGAGAGCCCTGTGACTCGAGCTGGGTTTTTCAGGCCAGGTTCGACGGCGTCGGCGGGCCGGGCTTGTTACTTTCCGTCATCGTCGGCGCCGCCGGACCTGCCGGAGCACGTGACAGCGCACCAGATGCGGCCGAGCGGCGGCGTGGCTGCGGGGTCGTCGGTGGATGCCTCGAGGACGACGACGTCCTCGAGGGATGAGGCGGCCTCGGTCTCTGCCAGCAATGCCAGCGATCTGGAGGCGGCGGAGTGGGTGGAGCAGGACGATCCCGGCGTCTATATCACCATCCGGGAGTTGCCCGATGGCTCCAGAGAGCTCCGCCGCGTCAGATTCAGGTTTGTTTTTATGCAATGCGCGTGTGTATACATTGCTTGTGCACTGAAATATGAGGGGGGAAATCACTTAACATTTGTTTTAAATCAAGTATTAATTTCAAAAATGTGTTGGTTCATTTTCACATGTGTATCAGACCGATAGTTCATTTTGTTCAAGCAGTAGCACCCGGTCATTGTTCCCACGTTGCCTCCTGTGGAGAAGAAATGCATGTGCGTATCATAGCTCGTGGCCGGAAATTTGAGGGGGCTGCTCATTGCTTTTGAGTCAAATATTAGTTTTATGAACTGTAATGGGTCGTTCTCTCATGTGTATCAGAGTTGATAGTTTATTTTTGTCAAGCAAAATCGTAGTGGCTTATTGCTCCCACGCTGCCTCTATGGAGAAGCCTGTGCTAGTGATGCACCTGCAAGTTCGCATAAAGTCGCATGATTTTGG

Network for GWHGAAEX015761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13713.5	BRX_N	24	52	1.40E-09
PF08381.10	BRX	124	179	4.40E-26
PF08381.10	BRX	295	325	9.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.230
SRP064423	SRR2545915	Juvenile tuber	0.560
SRP108465	SRR5643513	five period of Gastrodia elata	0.420
	SRR5643514	five period of Gastrodia elata	0.660
	SRR5643515	five period of Gastrodia elata	0.300
	SRR5643524	five period of Gastrodia elata	0.930
	SRR5643525	five period of Gastrodia elata	0.270
	SRR5643528	five period of Gastrodia elata	0.190
	SRR5643658	five period of Gastrodia elata	0.850
	SRR5643659	five period of Gastrodia elata	0.270
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.490
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.31
	Mother_Gastro	Mother tuber of Gastrodia elata	0.08
	Mother_Juven	Mother tuber of Juvenile	0.17