Detail information of GWHGAAEX015765/evm.TU.scaffold_7.230
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-145 | FOG: PPR repeat |
| nr | gi|514819933|ref|XP_004984658.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g50990-like isoform X1 [Setaria italica] |
| Swissprot | tr|Q9FI49|PP428_ARATH | 2.00E-145 | Pentatricopeptide repeat-containing protein At5g50990 |
| trEMBL | tr|K7VJ11|K7VJ11_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFW88636.1, ECO:0000313|EnsemblPlants:GRMZM2G306482_P01} |
| TAIR | AT5G50990 | 2.00E-145 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 9823298 | 9860250 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015765
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 140 | 163 | 0.0025 |
| PF13041.5 | PPR_2 | 166 | 214 | 5.00E-10 |
| PF01535.19 | PPR | 242 | 266 | 0.23 |
| PF13041.5 | PPR_2 | 272 | 318 | 1.60E-10 |
| PF01535.19 | PPR | 345 | 369 | 0.48 |
| PF01535.19 | PPR | 412 | 438 | 0.021 |
| PF14432.5 | DYW_deaminase | 442 | 569 | 2.70E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.240 |
| SRR2545915 | Juvenile tuber | 0.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.370 |
| SRR5643514 | five period of Gastrodia elata | 1.340 | |
| SRR5643515 | five period of Gastrodia elata | 1.250 | |
| SRR5643524 | five period of Gastrodia elata | 0.920 | |
| SRR5643525 | five period of Gastrodia elata | 0.530 | |
| SRR5643528 | five period of Gastrodia elata | 0.370 | |
| SRR5643658 | five period of Gastrodia elata | 0.160 | |
| SRR5643659 | five period of Gastrodia elata | 1.820 | |
| SRR5643660 | five period of Gastrodia elata | 1.600 | |
| SRR5643661 | five period of Gastrodia elata | 2.040 | |
| SRR5643662 | five period of Gastrodia elata | 1.430 | |
| SRR5643663 | five period of Gastrodia elata | 1.350 | |
| SRR5643664 | five period of Gastrodia elata | 1.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.07 |
| Juven | Juvenile tuber | 1.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.57 | |
| Mother_Juven | Mother tuber of Juvenile | 0.72 |