Detail information of GWHGAAEX015766/evm.TU.scaffold_7.232
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|170291147|ref|YP_001737963.1| | 1.00E-08 | 30S ribosomal protein S27E [Candidatus Korarchaeum cryptofilum OPF8] |
| KOG | KOG1779 | 6.00E-57 | 40s ribosomal protein S27 |
| nr | gi|565468388|ref|XP_006292074.1| | 1.77E-56 | hypothetical protein CARUB_v10018269mg, partial [Capsella rubella] |
| Swissprot | tr|Q9M2F1|RS272_ARATH | 2.00E-57 | 40S ribosomal protein S27-2 |
| trEMBL | tr|R0FQY1|R0FQY1_9BRAS | 7.00E-57 | 40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671} (Fragment) |
| TAIR | AT3G61110 | 6.00E-57 | ribosomal protein S27 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 9883040 | 9884350 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015766
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01667.16 | Ribosomal_S27e | 30 | 84 | 1.10E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02978 | RP-S27e, RPS27 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 75.130 |
| SRR2545915 | Juvenile tuber | 90.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 151.630 |
| SRR5643514 | five period of Gastrodia elata | 159.660 | |
| SRR5643515 | five period of Gastrodia elata | 151.390 | |
| SRR5643524 | five period of Gastrodia elata | 158.700 | |
| SRR5643525 | five period of Gastrodia elata | 178.950 | |
| SRR5643528 | five period of Gastrodia elata | 181.070 | |
| SRR5643658 | five period of Gastrodia elata | 162.260 | |
| SRR5643659 | five period of Gastrodia elata | 148.810 | |
| SRR5643660 | five period of Gastrodia elata | 146.830 | |
| SRR5643661 | five period of Gastrodia elata | 147.220 | |
| SRR5643662 | five period of Gastrodia elata | 139.940 | |
| SRR5643663 | five period of Gastrodia elata | 148.880 | |
| SRR5643664 | five period of Gastrodia elata | 126.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 114.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 110.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 138.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 107.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 110.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 96.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 116.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 110.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 149.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 138.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 190.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 190.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 228.69 |
| Juven | Juvenile tuber | 180.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 113.12 | |
| Mother_Juven | Mother tuber of Juvenile | 138.06 |