Gene detail

Detail information of GWHGAAEX015769/evm.TU.scaffold_7.235

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15897139\|ref\|NP_341744.1\|	2.00E-11	hypothetical protein SSO0188 [Sulfolobus solfataricus P2]
KOG	KOG1361	7.00E-176	Predicted hydrolase involved in interstrand cross-link repair
nr	gi\|670442107\|ref\|XP_008661391.1\|	0	PREDICTED: uncharacterized protein LOC100192920 isoform X1 [Zea mays]
Swissprot	tr\|Q38961\|SNM1_ARATH	2.00E-176	DNA cross-link repair protein SNM1
trEMBL	tr\|K7TT02\|K7TT02_MAIZE	0	Uncharacterized protein {ECO:0000313\|EMBL:AFW58147.1, ECO:0000313\|EnsemblPlants:GRMZM2G021802_P01}
TAIR	AT3G26680	7.00E-176	DNA repair metallo-beta-lactamase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	9934445	9966833	-

Transcript Sequence
>GWHTAAEX015769 ATGGACATCTACGAAGACGATATTTCTCACTTCAGCGATCTTGACAACAATGGCTTCCCCATCTGCTCGAGAACTAGCGATTTCGCTGTTGATTTCTATTTTAGCGGAACTAATTGTTCGCACCTGATACGGGAGGATGAGGGCGGTGAGTTTTCGCAGAGCGGGGAGAAGGAGAAGAGCCTTGTTCAGCGGGATCTCTTCCAAGTTTGGGGGATCAAGAACCCATCGGAAAAGCGAGGACTTAAAATCCCCTCACCACCTAGGAAAAGGCACCGGCAGGTCAATGGGGATTTTGCTAGGGCTACCAAAGAAAGAAATGGCGAGATTAATGAGCATGATCAACCCCGTTCTTGCCCATTCTATAAGAAGATCCCGGGCACAAAATTTACAGTAGACGCCTTTCGTTATGGGGCAATAGATGGATGCTCTGCTTATTTTTTGAGTCATTTTCATTGTGATCACTATGGGGGCTTAAACAGGAGATGGTCGCATGGAAATATTTACTGCACTGACCTTACAGCTCGCTTGCTGAGAATTTGTCTTTCAGTAAATCCACAATACATCTTCCCTCTACAACTTGATGCTGAATATGTTATTGAAGATGTAAAAGTGACTTTACTGGAAGCTAATCATTGTCCTGGAGCAGCTCTGATCCTATTACGTTTGAAGGATGGAAAGTGCTATCTACACACAGGCGATTTCAGGGCATCTAAATCAATGCAGCGGCATCCTTTGCTGACTAAGCAGCACATCAATCTGCTTTATTTGGATACAACATATTGTAACCCCAAATATAGCTTTCCACCTAAAGATGAGGTTCTAGATTTTGTTGTGAGGACCACTCGTATATTTTTGTCTAAGCAGCCAAAGAGCCTGATTGTTGTTGGAGCATACAGCATAGGGAAGGAATCGGTTTATCTTGCCATTTCAAAGGCTTTAGAGGTTTCAATTTATGCAAACGCCTTCAGGAGAAAGATGTTGCAATCATTTGGTTGGCCTGAACTTTCAGGAAAGCTGTGTTCATGCACAGAGAGTTCTCCACTTCATGTTTTACCTATTTCTTGTTTACATCATGAGCATTTGAAAGAATACCTGAAAACCTGCAAACAACAATTCAAAACTGTCTTGGCATTTCGTCCGACAGGTTGGACATACTCTGAGAGAACTGAAAGCCACTTAGATCTAATCAGGCCTGTCGTTAATGGCAATGTCACCATATATGGGGTTCCATATAGCGAGCATTCGAGTTTCACCGAGCTTAGAGAATTTGTGAAGTTCTTGAAACCCGAAAAAATCATCCCTACTGTTAATGCTGGCAATGCTGCTAGTCGTGCGAAGATGCAGTCTTATTTCAAGGAATGGTTAAAAGTATAATGTTTACAGTTAAACAAAGCTCTCTTTATTGTATTCAATATATTCTGCAGTTCATTAATATTCTGTCTTTCTGCTTGAAAAAGTGTACTAGTTCTCAGTTCCATTTGCCAGGTAATGGCGTTTGGTCATAAGTATTTATTCTGCTTTGTAATTATAAATTTTGTAATAATAGTGGCTTTTGTAAAATATTCTCCATATATTCGTTCTCTAACATCGTCAGAAACGCAGTTGTATTACATTTCTCAAAAATAGTTACTTGCCAAGATTTTTATTTTAAGCGGTACAAAATTGTATTCTAACTGTTAATTAAGTAAAAAGTGAAAGAAAACGATTTTGC

Network for GWHGAAEX015769

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07522.13	DRMBL	335	439	7.40E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.230
SRP064423	SRR2545915	Juvenile tuber	1.180
SRP108465	SRR5643513	five period of Gastrodia elata	1.320
	SRR5643514	five period of Gastrodia elata	2.600
	SRR5643515	five period of Gastrodia elata	1.970
	SRR5643524	five period of Gastrodia elata	2.540
	SRR5643525	five period of Gastrodia elata	1.680
	SRR5643528	five period of Gastrodia elata	1.000
	SRR5643658	five period of Gastrodia elata	1.610
	SRR5643659	five period of Gastrodia elata	2.350
	SRR5643660	five period of Gastrodia elata	2.930
	SRR5643661	five period of Gastrodia elata	3.070
	SRR5643662	five period of Gastrodia elata	2.340
	SRR5643663	five period of Gastrodia elata	2.280
	SRR5643664	five period of Gastrodia elata	2.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.660
SRP279888	Gastro	Gastrodia elata tuber	2.47
	Juven	Juvenile tuber	2.61
	Mother_Gastro	Mother tuber of Gastrodia elata	2.20
	Mother_Juven	Mother tuber of Juvenile	3.33