Gene detail

Detail information of GWHGAAEX015770/evm.TU.scaffold_7.236

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|268316627\|ref\|YP_003290346.1\|	8.00E-127	amidase [Rhodothermus marinus DSM 4252]
KOG	KOG1211	0	Amidases
nr	gi\|743812767\|ref\|XP_010929519.1\|	0	PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial isoform X1 [Elaeis guineensis]
Swissprot	tr\|E0CTY1\|GATA_VITVI	2.00E-22	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03150} (Precursor)
trEMBL	tr\|B6UHK5\|B6UHK5_MAIZE	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACG48838.1}
TAIR	AT5G07360	0	Amidase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	9981541	9995430	-

Transcript Sequence
>GWHTAAEX015770 AAGAGTTTTTTTTTAAACAATCATTAATAAGACAATAACACAAATATTAAAAAGCCGCAAAAATATTTCTTTTTTTTCTGACAATCAAAATATCGAGCACAAAAATACTCGGCTACCATTATTAAGCATATTGCGGGAACTTAAAACATGCCCGTTGTCGTGTGCCGGCATGGGGCAACCAGAGGTAAGCTCGCCGTCTTATTTTGTATCCTGGCAGCGGCAATCGCCGTCTTCTCTCCCGCCTCATCTAGAACTTTGGCTGGGTTGCTTGATTCTGCCAGAGAACATCTCTACGCAAAGGTAAACAAAGAATCCCATCCAGTGGTTGAGTCAAAAGGAGTAGAAAAAGCTAGTGATGTTTTAGTGCTTAAGGATGCGCTCAGGTATCTTGATGCGGATTTCTTCAATAAATCAAAGTTGCAAGAAATGGCTGAGGGTGCAAAAGAACTCAACATACCTGGGTTCAGAGAGAACCGCAAGCTTATAGCTTCTGTTGACGGTGGTCTAGATAACCCTTCAGTTCTAGTGTTTAATCCCTCTTGGGTTACCAATGATGGGAGCCACGATACTCCTAAATTTCATTATCCTCATCTATCAGGTGTAAAGAGGCCAGACAATGAGGATGATATTGCTTTCATGACTATTCTTGAATTAGGTGCCCTTATTAAAACCAAACAGATAACATCCAGCGAACTTACAACAATTTTCTTAAAGAGATTGAAGAGGTATGGTCACATCCTTGAAGCAGTGGTCACATATACAGAGAAATTGGCATATAGTCAAGCAAAGAATGCGGATGAGCTACTTGAACAAGGAGTATATTTGGGTCCACTTCATGGAATTCCCTATGGATTAAAAGATATAGTAGCAGTGCCTGGCTATAAAACAACATGGGGATCAAAGGCATTCAAGGATCAAGTTATTGATACAGAAGCTTGGGTTTATAAAAGGTTAAAAGAAGCTGGTTCAGTTCTCATTGCCAAAGTTGTCACCGGATCATTGGCCTATGATGATATGTGGTTTGGAGGTAGGACGCGAAACCCTTGGAACATTGAGGAATACTCAACTGGCTCATCAGCAGGATCAGCAGCCACTACTTCTGCAGGGCTTGTCCCTTTTGCTATTGGGTCAGAGACATGTGGGTCTATAACTTACCCTGCAGCTCGCTGTGGAGTGACTGGCTTAAGACCAACCTTTGGAACTGTGGGTCGAAGCGGGGTGATGTCCTTATCTGAGAGCTTGGATAAACTTGGCCCTTTCTGCCGGTGCGCCGCGGATTGTGCGATTATAATAGATACAATCCGGGGTAAGGACCCGGAGGATCTTTCGTCTCGGCACGTTCCACTTGATGATCCATTTTCAGTTGATATAAAAAAACTGACTGTTGGTTATCTTCAGGATGCTGAAATGGAGGTTGCGAATGTGCTATCTTCCATGGGAGTTAAGGTCATTCCTTTCAAGCTAAATTATACAGTCAATTCAGTTCAGGCAATCCTTAATTTTACTATGGACGTGGATGTATTGTCGCACTTTGATAAGTGGCAACGTATGGGGCTAGATGACGAATATGAAGCACAGGACCAGTGGCCTGTTGAGCTGCGTCGTGCTCGATTGATCCCAGCTGTAGACTACTTGCAGTCACAGAGGGCAAGAGGAAAGTTAATTCGTGAAGTTCAAGAGAGCTTCACCGTAGACGCATTTATTGGGAATGCAACAGACTGGGAAAATGTTTGTTTGGGGAATCTTCTTGGTATGCCTGTTGTGATTGTTCCCACCGGCTTCAAAGCCATTGAGAACGCCCCTAAAAGTGGTACCAAGAGAAGAACAACTGTTACCACTGGCATTTATGCCCCTCCAGACAAAGACCATATTGTTTTAGCCTTAGCAATGGCATATCAATCTGCCACAGATCATCACCTGCAGCGTCCACCCATTAATGATCTTGGGCCAAATGATCCGACATCAGTTCCTGGTGCAAATTAGCTGCTGCTTCATTTGTTATGATGGAGTCAAGATTGTTTTTAGTTGTTGACTTATCATTGGGGGATAATTACTGGTATAGCACCCAAGTTGTATGTCTTTACATTATTTATGATGCTCAAACTTCAAAATTTTCAAAACTACCAAGTCTATTTTCAAACTGGGTGTCTATTTTGTGTAATGGTAAAAAGATAAATATTGATTTTGTTAGTAATGAGGTTGGACTGTTGAATCTGTGAATGGTGCAATTTTGGTTTGTATGCTACTCAAGCTTTTTGAAACATTGTCATTTGGTTGCTTATACCAAGTTGTGTTTATAGATTTTTGCAGTAATTTGTGCTGTAACAATTCAATCAAATACTAAGTATACATTCTGTTTTTGTCTAAGTATACATTCTATTGAAAGTGTTGATGATTTTTTATAATTCAAG

Network for GWHGAAEX015770

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01425.20	Amidase	182	452	9.80E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	69.080
SRP064423	SRR2545915	Juvenile tuber	43.130
SRP108465	SRR5643513	five period of Gastrodia elata	24.150
	SRR5643514	five period of Gastrodia elata	24.020
	SRR5643515	five period of Gastrodia elata	20.790
	SRR5643524	five period of Gastrodia elata	23.090
	SRR5643525	five period of Gastrodia elata	39.360
	SRR5643528	five period of Gastrodia elata	27.220
	SRR5643658	five period of Gastrodia elata	26.000
	SRR5643659	five period of Gastrodia elata	40.660
	SRR5643660	five period of Gastrodia elata	46.270
	SRR5643661	five period of Gastrodia elata	41.360
	SRR5643662	five period of Gastrodia elata	47.360
	SRR5643663	five period of Gastrodia elata	46.560
	SRR5643664	five period of Gastrodia elata	45.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.800
SRP279888	Gastro	Gastrodia elata tuber	33.26
	Juven	Juvenile tuber	40.30
	Mother_Gastro	Mother tuber of Gastrodia elata	35.80
	Mother_Juven	Mother tuber of Juvenile	24.57