Detail information of GWHGAAEX015773/evm.TU.scaffold_7.239
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743858598|ref|XP_010942389.1| | 0 | PREDICTED: uncharacterized protein LOC105060408 [Elaeis guineensis] |
| trEMBL | tr|F6H2J2|F6H2J2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46179.1} |
| TAIR | AT5G07400 | 0 | forkhead-associated domain-containing protein / FHA domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 10021375 | 10087903 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015773
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00498.25 | FHA | 58 | 153 | 1.20E-11 |
| PF06087.11 | Tyr-DNA_phospho | 315 | 534 | 1.20E-24 |
| PF08797.10 | HIRAN | 560 | 686 | 1.00E-13 |
| PF06087.11 | Tyr-DNA_phospho | 716 | 947 | 1.10E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0016818 | Molecular Function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008081 | Molecular Function | phosphoric diester hydrolase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.000 |
| SRR2545915 | Juvenile tuber | 14.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.340 |
| SRR5643514 | five period of Gastrodia elata | 9.900 | |
| SRR5643515 | five period of Gastrodia elata | 8.590 | |
| SRR5643524 | five period of Gastrodia elata | 8.390 | |
| SRR5643525 | five period of Gastrodia elata | 7.330 | |
| SRR5643528 | five period of Gastrodia elata | 4.980 | |
| SRR5643658 | five period of Gastrodia elata | 5.380 | |
| SRR5643659 | five period of Gastrodia elata | 8.290 | |
| SRR5643660 | five period of Gastrodia elata | 9.140 | |
| SRR5643661 | five period of Gastrodia elata | 8.090 | |
| SRR5643662 | five period of Gastrodia elata | 9.660 | |
| SRR5643663 | five period of Gastrodia elata | 10.000 | |
| SRR5643664 | five period of Gastrodia elata | 10.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.30 |
| Juven | Juvenile tuber | 15.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.89 | |
| Mother_Juven | Mother tuber of Juvenile | 12.64 |