Detail information of GWHGAAEX015777/evm.TU.scaffold_7.243
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434387098|ref|YP_007097709.1| | 7.00E-74 | uridylate kinase [Chamaesiphon minutus PCC 6605] |
| nr | gi|695033799|ref|XP_009404384.1| | 0 | PREDICTED: uncharacterized protein LOC103987725 isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LJG8|ASIL2_ARATH | 3.00E-19 | Trihelix transcription factor ASIL2 {ECO:0000305} |
| trEMBL | tr|M0T6P0|M0T6P0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13420_001} |
| TAIR | AT3G10030 | 0 | aspartate/glutamate/uridylate kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 10184900 | 10208890 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015777
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13837.5 | Myb_DNA-bind_4 | 175 | 267 | 2.10E-20 |
| PF00696.27 | AA_kinase | 325 | 536 | 6.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Trihelix |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process |
| GO:0033862 | Molecular Function | UMP kinase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.430 |
| SRR2545915 | Juvenile tuber | 13.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.160 |
| SRR5643514 | five period of Gastrodia elata | 10.180 | |
| SRR5643515 | five period of Gastrodia elata | 8.610 | |
| SRR5643524 | five period of Gastrodia elata | 8.570 | |
| SRR5643525 | five period of Gastrodia elata | 10.360 | |
| SRR5643528 | five period of Gastrodia elata | 10.200 | |
| SRR5643658 | five period of Gastrodia elata | 10.100 | |
| SRR5643659 | five period of Gastrodia elata | 9.950 | |
| SRR5643660 | five period of Gastrodia elata | 10.170 | |
| SRR5643661 | five period of Gastrodia elata | 9.150 | |
| SRR5643662 | five period of Gastrodia elata | 10.350 | |
| SRR5643663 | five period of Gastrodia elata | 9.670 | |
| SRR5643664 | five period of Gastrodia elata | 11.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.99 |
| Juven | Juvenile tuber | 15.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.79 | |
| Mother_Juven | Mother tuber of Juvenile | 15.78 |