Gene detail

Detail information of GWHGAAEX015779/evm.TU.scaffold_7.245

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|16080937\|ref\|NP_391765.1\|	4.00E-144	UDP-glucose 4-epimerase [Bacillus subtilis subsp. subtilis str. 168]
KOG	KOG1371	0	UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
nr	gi\|695000610\|ref\|XP_009412643.1\|	0	PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q42605\|UGE1_ARATH	0	Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1
trEMBL	tr\|M0S132\|M0S132_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P18740_001}
TAIR	AT1G12780	0	UDP-D-glucose/UDP-D-galactose 4-epimerase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	10284473	10320843	+

Transcript Sequence
>GWHTAAEX015779 AAAATTAAATATCACTCTAATAGTTTTCTCATTTTAAATGTATATTTAAACCTTTCAAACAAATTTCTTATATGTTTTTCTCTGTAATCATTTACTCTATTCAGATCCCATTCTTTCCCTACGGCATCCACTTTTATTTGCTGAAGCCCACGAAGATCGAAAGGTTATCAAATCCCCTGGCCAAGTTTTTAATAATCTTTGCTATCCAAGCTCGTCCAACGTAATCAAACGCACAACTCTGATCTTTCAGTGTCAATGGGATCTGAAACTCGTATACAAACCATTCTGGTCACCGGCGGCGCGGGTTTTATCGGTACACACACAGTCCTCCAGCTTCTTAAAGAAGGCTATAAAGTTTCCATCGTTGACAACCTCGATAACTCCGTGGAAGAGGCAGTAGATCGCGTGAGGATTCTCGCTGGACCTGATCTGTCACGAAACCTCCGATTTTATCTGGGTGATCTACGGAGTAATGAAGATTTGGAAAGAGTGTTTTCCGAGAGGAGGTTTGACGCTGTCATTCACTTTGCTGGGCTAAAGGCTGTTGGGGAGAGTGTCGCTAAACCTCATCTGTATTACAGCAATAATTTGATCGGGACATTAAATTTATTTGAATTTATGACAAAATATGAATGTAAAAAGATGGTATTCTCCTCCTCTACTATTGTTTATGGTCAACCTGAAAAAGTTCCATGTGTTGAAGATTTTGACCTGAAGGCAATGAACCCATATGGTCGAACCAAACTCTTTCTTGAAGAAATTGCTCGAGATATTCAAAGAGCCGATCCAGAATGGAGAATTATACTGCTAAGATACTTCAACCCAGTTGGTGCTCATGAAAGTGGCCTCATTGGTGAAGATCCAAAGGGCATTCCAAATAATCTCATGCCTTATATTCAACGTGTTGCTGTGGGCAGATTGCCCAAGCTGAATGTGTATGGCAATGACTATCCAACAAAGGATGGGACAGCGATTCGTGACTATATTCATGTCATGGACTTGGCTGATGGTCATATTGCAGCTCTACAGAGGCTTTTCCATACAAATGACATTGGTTGCGTTGCCTATAATTTAGGAAGTGGACGTGGCACATCTGTCCTTGAGATGGTTACAGCTTTCGAGAAAGCATCTGGCAAGAAAATTCCGTTAAAGTGGTGTCCAAGGAGGCACGGTGATGCCACAGAAGTTTATGCTTCTACAGTGAAGGCTGAGAAAGAGCTTGGTTGGAGAGCAAAGTATGGCATAGAAGAAATGTGCAGAGACCAGTGGAACTGGGCAAGCAATAACCCATATGGATACAGGCCATAAGATTCAGAGTTGTTCGTGGAGATAGCTTCATGTGAAGAGCTTAACCAGGAGGATGACTTTACTGCTACTGCTGAGGCTTATATAGCTTTCATTTTATGTTTGTGAGGATGAGTGTTTCCTTTTATTTGAACTTTAATTCAACATTGTATTACTTTAGACTCTAAATATATATTACTTTTCTGCACTTTTATACTGAGTTGAGCTATATTTTTTACTTATGCATTATGGATATGGATATTGTATACATTGCTTCCACACTCTGTTATTTAAGTATGCCTACTTAATGAATGAATTACAGATACAAGTGGCAAATTCTG

Network for GWHGAAEX015779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.4	GDP_Man_Dehyd	11	336	1.20E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01784	galE, GALE	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006012	Biological Process	galactose metabolic process
GO:0003978	Molecular Function	UDP-glucose 4-epimerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	70.290
SRP064423	SRR2545915	Juvenile tuber	45.720
SRP108465	SRR5643513	five period of Gastrodia elata	43.830
	SRR5643514	five period of Gastrodia elata	45.040
	SRR5643515	five period of Gastrodia elata	44.120
	SRR5643524	five period of Gastrodia elata	48.200
	SRR5643525	five period of Gastrodia elata	54.390
	SRR5643528	five period of Gastrodia elata	69.360
	SRR5643658	five period of Gastrodia elata	56.850
	SRR5643659	five period of Gastrodia elata	42.030
	SRR5643660	five period of Gastrodia elata	40.010
	SRR5643661	five period of Gastrodia elata	41.070
	SRR5643662	five period of Gastrodia elata	38.550
	SRR5643663	five period of Gastrodia elata	41.180
	SRR5643664	five period of Gastrodia elata	36.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.630
SRP279888	Gastro	Gastrodia elata tuber	44.23
	Juven	Juvenile tuber	38.08
	Mother_Gastro	Mother tuber of Gastrodia elata	48.58
	Mother_Juven	Mother tuber of Juvenile	59.13