Detail information of GWHGAAEX015782/evm.TU.scaffold_7.248
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325108636|ref|YP_004269704.1| | 6.00E-14 | 50S ribosomal protein L36 [Planctomyces brasiliensis DSM 5305] |
| KOG | KOG4122 | 7.00E-24 | Mitochondrial/chloroplast ribosomal protein L36 |
| nr | gi|672131243|ref|XP_008789180.1| | 2.75E-26 | PREDICTED: uncharacterized protein LOC103706747 [Phoenix dactylifera] |
| Swissprot | tr|Q9MUU8|RK36_MESVI | 1.00E-13 | 50S ribosomal protein L36, chloroplastic |
| trEMBL | tr|M0RU70|M0RU70_MUSAM | 7.00E-27 | Ribosomal protein {ECO:0000256|RuleBase:RU000570} |
| TAIR | AT5G20180 | 7.00E-24 | Ribosomal protein L36 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 10436954 | 10437466 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015782
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00444.17 | Ribosomal_L36 | 1 | 38 | 1.70E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02919 | RP-L36, MRPL36, rpmJ | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.410 |
| SRR2545915 | Juvenile tuber | 4.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 1.280 | |
| SRR5643515 | five period of Gastrodia elata | 0.670 | |
| SRR5643524 | five period of Gastrodia elata | 0.590 | |
| SRR5643525 | five period of Gastrodia elata | 1.050 | |
| SRR5643528 | five period of Gastrodia elata | 1.230 | |
| SRR5643658 | five period of Gastrodia elata | 1.110 | |
| SRR5643659 | five period of Gastrodia elata | 0.390 | |
| SRR5643660 | five period of Gastrodia elata | 0.640 | |
| SRR5643661 | five period of Gastrodia elata | 0.650 | |
| SRR5643662 | five period of Gastrodia elata | 0.440 | |
| SRR5643663 | five period of Gastrodia elata | 1.640 | |
| SRR5643664 | five period of Gastrodia elata | 1.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.78 |
| Juven | Juvenile tuber | 2.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.76 | |
| Mother_Juven | Mother tuber of Juvenile | 1.95 |