Detail information of GWHGAAEX015786/evm.TU.scaffold_7.253
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695027132|ref|XP_009400894.1| | 7.94E-60 | PREDICTED: ethylene-responsive transcription factor ERF039-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LYD3|DREB3_ARATH | 5.00E-48 | Dehydration-responsive element-binding protein 3 |
| trEMBL | tr|I1KJN6|I1KJN6_SOYBN | 8.00E-53 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G14560.1} |
| TAIR | AT5G11590 | 2.00E-47 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 10554356 | 10555361 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015786
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 38 | 87 | 2.00E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.100 |
| SRR2545915 | Juvenile tuber | 3.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.290 |
| SRR5643514 | five period of Gastrodia elata | 7.630 | |
| SRR5643515 | five period of Gastrodia elata | 20.230 | |
| SRR5643524 | five period of Gastrodia elata | 12.320 | |
| SRR5643525 | five period of Gastrodia elata | 12.460 | |
| SRR5643528 | five period of Gastrodia elata | 20.690 | |
| SRR5643658 | five period of Gastrodia elata | 11.710 | |
| SRR5643659 | five period of Gastrodia elata | 15.300 | |
| SRR5643660 | five period of Gastrodia elata | 5.970 | |
| SRR5643661 | five period of Gastrodia elata | 9.460 | |
| SRR5643662 | five period of Gastrodia elata | 18.350 | |
| SRR5643663 | five period of Gastrodia elata | 12.900 | |
| SRR5643664 | five period of Gastrodia elata | 7.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.36 |
| Juven | Juvenile tuber | 0.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.62 | |
| Mother_Juven | Mother tuber of Juvenile | 2.79 |