Detail information of GWHGAAEX015787/evm.TU.scaffold_7.254
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186685368|ref|YP_001868564.1| | 1.00E-37 | hypothetical protein Npun_F5300 [Nostoc punctiforme PCC 73102] |
| KOG | KOG0292 | 0 | Vesicle coat complex COPI, alpha subunit |
| nr | gi|672165744|ref|XP_008802787.1| | 0 | PREDICTED: coatomer subunit alpha-1 [Phoenix dactylifera] |
| Swissprot | tr|Q0J3D9|COPA3_ORYSJ | 0 | Coatomer subunit alpha-3 |
| trEMBL | tr|C5WN40|C5WN40_SORBI | 0 | Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354} |
| TAIR | AT1G62020 | 0 | Coatomer, alpha subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 10602610 | 10614106 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015787
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 45 | 79 | 6.20E-05 |
| PF00400.31 | WD40 | 84 | 121 | 4.10E-08 |
| PF00400.31 | WD40 | 126 | 163 | 9.20E-08 |
| PF12894.6 | ANAPC4_WD40 | 212 | 292 | 1.60E-05 |
| PF04053.13 | Coatomer_WDAD | 344 | 769 | 5.90E-133 |
| PF06957.10 | COPI_C | 816 | 1220 | 9.50E-159 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005198 | Molecular Function | structural molecule activity |
| GO:0030126 | Cellular Component | COPI vesicle coat |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.810 |
| SRR2545915 | Juvenile tuber | 51.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.860 |
| SRR5643514 | five period of Gastrodia elata | 32.340 | |
| SRR5643515 | five period of Gastrodia elata | 36.530 | |
| SRR5643524 | five period of Gastrodia elata | 35.440 | |
| SRR5643525 | five period of Gastrodia elata | 25.170 | |
| SRR5643528 | five period of Gastrodia elata | 25.430 | |
| SRR5643658 | five period of Gastrodia elata | 25.710 | |
| SRR5643659 | five period of Gastrodia elata | 39.030 | |
| SRR5643660 | five period of Gastrodia elata | 37.490 | |
| SRR5643661 | five period of Gastrodia elata | 34.860 | |
| SRR5643662 | five period of Gastrodia elata | 39.080 | |
| SRR5643663 | five period of Gastrodia elata | 40.090 | |
| SRR5643664 | five period of Gastrodia elata | 34.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 37.67 |
| Juven | Juvenile tuber | 34.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.69 | |
| Mother_Juven | Mother tuber of Juvenile | 38.39 |