Gene detail

Detail information of GWHGAAEX015801/evm.TU.scaffold_7.268

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0802	E3 ubiquitin ligase
nr	gi\|743827805\|ref\|XP_010933684.1\|	PREDICTED: E3 ubiquitin protein ligase RIN2-like [Elaeis guineensis]
Swissprot	tr\|Q8VYC8\|RIN2_ARATH	E3 ubiquitin protein ligase RIN2
trEMBL	tr\|M0RWY2\|M0RWY2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P04240_001}
TAIR	AT4G25230	RPM1 interacting protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	11132025	11194036	+

Transcript Sequence
>GWHTAAEX015801 GTGATTCGATTAAAATGCACTCGCGGATCTTCGTCGTCGGCAAGACGGCACTGGTGCTTTCTTCATCCCGACCGAGTTGCGTTTCCTTGGATTGGAGCTGCTGATAATGCTGATTGAACAAAAGAAAGGTGTGGACTTGTGGAAATGACTGTGCGTTCCATTGCGGTGTCCGCAGCTTGCTTAGTTCTGAGCATCATCGGGCTGCAATGGTGGGTGTTCTCATTCCTCTCACGGAAGAGCCTTGGCAGGCGGGATGCAGGGCGTGCTGTGGAGGAGTTACTGGGTTCAAACTTCACCGTTTCTTTACTGGTCAATCTAGCGGTTAATGCATATATATTTCTAGTTCTGTGTCTCAAGATGATATTCTTTAAGCAATTGTATCCTTCAGAGTCTCGGAAACTTATGGAACAATTAATTAATTATGCTATTTACAAGGGAACTTTCCTTCCTTTGGTTGTACCACCTAATCTTTCACAAACTGTTTTATGGTCAACATGGCTGGTTGTACTATGTTCCCTTAAGATGTTTCAGTCACTTGCTAAAGATCGGCTTGAGCGGTTAAATGCATCACCTACTACAACACCAATCAAATACTTCGGTGTCTTTTCTGCTTTATTGTTTGTGCTTGCTGCTGATATGCTTTGGCTAAGGCTGTGCGTGGTGGTATATACATCTTTCAGATCCAGTTTGTTTCTTCTGCTGTTTTTTGAGCCTTTCAGTATTGCTTTTGAGACATTGCTGGCTGTCATGATATATGGATTTTACTTGATTGAGTTATGGCATCGCCATTCAGTTGACAATGGTAACGACTGCTTGTGGTCTCAAGTTTTTTTAAAATCTACAGCAGGGTCTTTGGCAGAGTGGAAAGGACAACTTACTCGAAATTGCGGTTTTCTTTTGGATATGATGACTTTATTGATGGGAATAGGTCATTATGTGATGATCTGGTGGCTTCACGGCATGGCATTCCACCTTGTGGATGCAATTCTCTTCCTAAATCTGCGTGCTATTTTTAATGCATTGATTAAGCTGGTAAAGGGATTCATCAAGTTGAAGAAGGCGTTAAGTTCCCTTGATGGTTCTCTTCCTGATGCTACAACTGAAGAGTTATCTGCGTTTAATGATGAGTGTGCAATTTGTAGAGGACCAATGGCCAGGGCTAAGAAACTGTCATGCAACCATCTCTTTCATCTTGCATGCTTACGATCTTGGTTGGATCAAGGCTTGGCTGAGGTGTATTCCTGTCCTATATGCCGAAGACCTTTGTTTCCTTCAAGCTCTCAAGATCAAGCAGTTTCTCTTGCTCAGCAAATCCCACTCAATGGACAAATTGTCGAACAAGTTAATTTAATGGAGGATCATCAGAGATTGCTAACCCATGAATCACCGCCCTCTTCTGCATCACCTAACCAGCAACAGCATCTTTCTGACTCTTTATGGAGTAGAGTTGGTCATGATTCTAGTTGGGTGTCTCCTTGGACGAATTCAAGAATGGACGGTGCCAGCACATCGAATGCAATTCGATCTGTTGGGTTGAATGGGGTGCAGTTGATGATGAGGCAGCTGGCTTCTGTTGGTGAAAATTATACCCATAGTTCTGTAGAAGCCTCACCTTGGAACTTGTGGCATAACTTCCATGTTTCAGGCTTTTCTCCACCTCAGCCTTCTCTTTCAAACCACAACATGAATGCTGCCAGCGTGAGAATTGTAAACACGGCATCTTCTGCAGATCTTCTTCCGATGGTGGATAGAGTGAGGGAAGTTTTACCTCACATACCTGATGCCGTAATCGTTCAGGATCTATTACGGACCAACAACATCAATATTACTGTGAATAACCTTCTTATGATGCAATAATAAACACTCTCAAATAGGCACATAAATAGTCTGAAAGCAGAGGGAAGGTTGAAACAGGTGATTTATTGCCTAAAGCAAGACTATGTTATCCATCGTCATTAAGGTCAGCGCATAAGAACTTAGAAGGAATGAGTTAATTTATTTAAAGATCACCTTAACAATTTGACACATTATTAGAAAAACATATTATTGCGTTGGCTTAATGTTAAAAAAGCTACTTTATTTTGCATTCTAATAAAGGCTGCGTTCCTTCCATTCCAATTTTAGGTTAATGCGAGTAAGGCTGCATTAATCTCTTTTAGTTTAGAAATAAACTTACTATTTACCTTATTATAATTATTTTTATTATTGTTATCATTTTTATTTGTGTTTAGTTGTATGCTGATATGATAGCTAAAATCGTGCTGCGGAATGAAAATTTTCTTATGATTTCTTAGCATGCAAGACATGCATTCAAAATGAATGTAAATACCAATAACTTTA

Network for GWHGAAEX015801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	327	371	1.20E-08
PF02845.15	CUE	533	567	2.90E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10636	AMFR, GP78	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.890
SRP064423	SRR2545915	Juvenile tuber	31.990
SRP108465	SRR5643513	five period of Gastrodia elata	24.070
	SRR5643514	five period of Gastrodia elata	24.610
	SRR5643515	five period of Gastrodia elata	22.850
	SRR5643524	five period of Gastrodia elata	26.550
	SRR5643525	five period of Gastrodia elata	31.110
	SRR5643528	five period of Gastrodia elata	27.200
	SRR5643658	five period of Gastrodia elata	31.360
	SRR5643659	five period of Gastrodia elata	24.270
	SRR5643660	five period of Gastrodia elata	23.090
	SRR5643661	five period of Gastrodia elata	26.570
	SRR5643662	five period of Gastrodia elata	19.850
	SRR5643663	five period of Gastrodia elata	21.530
	SRR5643664	five period of Gastrodia elata	18.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.980
SRP279888	Gastro	Gastrodia elata tuber	23.26
	Juven	Juvenile tuber	36.27
	Mother_Gastro	Mother tuber of Gastrodia elata	24.63
	Mother_Juven	Mother tuber of Juvenile	27.37