Detail information of GWHGAAEX015807/evm.TU.scaffold_7.274


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|563711425|ref|YP_008872203.1|3.00E-12RNP-1 like protein RNA-binding protein [Candidatus Saccharibacteria bacterium RAAC3_TM7_1]
KOGKOG01135.00E-150U1 small nuclear ribonucleoprotein (RRM superfamily)
nrgi|720024657|ref|XP_010263700.1|2.34E-177PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Nelumbo nucifera]
Swissprottr|Q42404|RU17_ARATH1.00E-150U1 small nuclear ribonucleoprotein 70 kDa
trEMBLtr|B9HEV8|B9HEV8_POPTR1.00E-171Uncharacterized protein {ECO:0000313|EMBL:EEE90671.2}
TAIRAT3G506705.00E-150U1 small nuclear ribonucleoprotein-70K

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000051136528011382282-
Transcript Sequence

Network for GWHGAAEX015807

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12220.7U1snRNP70_N411296.10E-20
PF00076.21RRM_11402092.20E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11093SNRP70 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0030619Molecular FunctionU1 snRNA binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms143.390
SRR2545915Juvenile tuber162.000
SRP108465SRR5643513five period of Gastrodia elata206.300
SRR5643514five period of Gastrodia elata187.880
SRR5643515five period of Gastrodia elata190.260
SRR5643524five period of Gastrodia elata187.910
SRR5643525five period of Gastrodia elata214.280
SRR5643528five period of Gastrodia elata170.940
SRR5643658five period of Gastrodia elata213.930
SRR5643659five period of Gastrodia elata277.210
SRR5643660five period of Gastrodia elata344.180
SRR5643661five period of Gastrodia elata274.570
SRR5643662five period of Gastrodia elata240.710
SRR5643663five period of Gastrodia elata295.660
SRR5643664five period of Gastrodia elata332.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1249.950
SRR6049655Rhizomagastrodiae_C368-T10_good_1190.650
SRR6049656Rhizomagastrodiae_C368-T07_good_1230.930
SRR6049657Rhizomagastrodiae_C368-T07_good_1295.770
SRR6049658Rhizomagastrodiae_C368-T04_good_1293.540
SRR6049659Rhizomagastrodiae_C368-T04_good_1324.140
SRR6049660Rhizomagastrodiae_C368-T01_good_1252.600
SRR6049661Rhizomagastrodiae_C368-T04_good_1279.620
SRR6049662Rhizomagastrodiae_C368-T01_good_1179.630
SRR6049663Rhizomagastrodiae_C368-T01_good_1227.530
SRR6049664Rhizomagastrodiae_C368-T10_good_1192.200
SRR6049665Rhizomagastrodiae_C368-T10_good_1192.200
SRP279888GastroGastrodia elata tuber 338.65
JuvenJuvenile tuber267.44
Mother_GastroMother tuber of Gastrodia elata 382.96
Mother_JuvenMother tuber of Juvenile 270.21