Detail information of GWHGAAEX015808/evm.TU.scaffold_7.275
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256391031|ref|YP_003112595.1| | 2.00E-28 | hypothetical protein Caci_1833 [Catenulispora acidiphila DSM 44928] |
| KOG | KOG4473 | 1.00E-66 | Uncharacterized membrane protein |
| nr | gi|672136052|ref|XP_008791707.1| | 1.35E-75 | PREDICTED: vacuolar iron transporter homolog 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9M2C0|VITH4_ARATH | 4.00E-67 | Vacuolar iron transporter homolog 4 |
| trEMBL | tr|M4EAS0|M4EAS0_BRARP | 7.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra025879.1-P} |
| TAIR | AT3G43660 | 1.00E-66 | Vacuolar iron transporter (VIT) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 11400340 | 11401251 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015808
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01988.18 | VIT1 | 45 | 114 | 7.40E-21 |
| PF01988.18 | VIT1 | 117 | 205 | 3.80E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030026 | Biological Process | cellular manganese ion homeostasis |
| GO:0005384 | Molecular Function | manganese ion transmembrane transporter activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.670 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.930 |
| SRR5643514 | five period of Gastrodia elata | 19.650 | |
| SRR5643515 | five period of Gastrodia elata | 14.940 | |
| SRR5643524 | five period of Gastrodia elata | 8.870 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.510 | |
| SRR5643658 | five period of Gastrodia elata | 0.080 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.180 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.540 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 70.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 85.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 59.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 61.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 68.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 198.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 198.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.96 | |
| Mother_Juven | Mother tuber of Juvenile | 0.86 |