Gene detail

Detail information of GWHGAAEX015810/evm.TU.scaffold_7.277

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	3.00E-37	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|695072679\|ref\|XP_009383471.1\|	0	PREDICTED: pleiotropic drug resistance protein 12-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q94A18\|AB29G_ARATH	0	ABC transporter G family member 29
trEMBL	tr\|K3XDS3\|K3XDS3_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si000040m}
trEMBL	tr\|K3XDS3\|K3XDS3_SETIT	1.00E-36	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si000040m}
TAIR	AT3G16340	0	pleiotropic drug resistance 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000005	11419316	11471215	-

Transcript Sequence
>GWHTAAEX015810 ATGGGTGAGAGTGGAGCAGGAAAGACAACACTTATGGATGTGCTGGCTGGTAGAAAGACTGGTGGCCACATTGAAGGGCAAATTAGGATTTCGGGCTACCCCAAGAAGCAATCAACATTTGCAAGGATTTCTGGTTATTGCGAACAGTTTGACGTACACTCTCCTCAGCTCACTGTCAACGAGTCTTTTATCTTTTCTGCATTACTTCGCCTTCCCAAGGAAATTAGCAAAGAAGAAAAATACAGATTCATAGGCATGGTGATGGATCTGGTTGAGCTCAAAAACCTCAAGGACGCATTGGTAGGGATTCCTGGAGTTTCTGGTTTGTCCACAGAGCAAAGGAAGAGGTTGACCATTGGTGTCGAGCTTGTTGCAAACCCATCAATAATATTCATGGATGAACCAACATCTGGCCTTGATGCAAGGGCTGCTGCCATTGTCATGAGAACAGTTAGAAACACCGTCAACACAGGAAGAACTGTTGTTTGTACTATCCATCAACCGAGCATTGACATATTTGAATCCTTCGATGAGTTGCTCTTGCTAAAGCGAGGTGGTCGATTAATATTCTCTGGACCTTTGGGACTAGATTCTCTAAATCTTATTGGGTATTTTGAGTCAATTTCTGGAGTTTACAAGCTTGAGGATGGGCGTAACCCAGCAGCATGGATGCTGGAAGAAAGTTCTACAACCTCTGAAGCAAGGCTAGGAATTGATTTTGCTGAGGTATACATATCCTCAGATTTATGCAAGCACAATATGGCTTTGGTAAAAGAATTGAGCAAACCATCTCCTGGAACTAGCGATCTTTTCTTCTCCACCCAGTATCCTCAATCAAGTTTTGATCAACTCAAGATCTTTTTATGGAAGTATTGGTCAATATATTGGAGATACCCAGAGTACAACCTCACAAGATTTAGCTATACTTTTTTGATTGCTTTACTAATTGGCTCCATATTTTGGAAGATTGGACTTCGCAGAAATAGTTCAGCTAACCTGTTTTCGATCATTGGCGTGATGTACGTTTCAATTCTTTTCCTTGGGTTTGGTAATTGCTCTTCTGTGCAAGCCCTCATTGCAAATGAGAGAAGTGTATATTATCGTGAAAGGGCTGCTGGGATGTACTCAGCTATTCCCTTTGCTCTTTCTCAGGTGATAATTGAATTGCCATACGTACTGTTCCAGTCAGTATACTATACTCTTATTGTTTATGCCATGCTAAGTTTCGAGTGGACGGCAGCGAAGTTTCTTTGGTTTTTTGTGGTCTCTTTTCTGACCTTCTTGTACTTTACCTACTATGGGATGCTATCAGTGGCAGTGTCTCCCAACCTGCAAGTTGCATCCATCTTGTCTGTGGGCTGGCTTTTCCTTTTCAATCTATTCTCAGGCTTTTTCATTACATATCCGGAACTCCCGGGATGGTGGATATGGTACTACTGGATCTGCCCCTTATCATGGACAATTTACGGGATCATTGGGACCCAATATGGCAACATGCATGACATTATACTTGTTCCAGGCCAGCCTAACCAGTCAATCGGAGATTAGTCATGCATCATTTTGGCTACAGGAACGGCCACGAGGCCCTTATGCTTTCTGTACTTGTGGCCTTCACCCTCCTTTTTGCTTCCCTATACATCTACTTCATTCAGCACTTAAACTTTCAGAATAGGTAGACATATACAGATGAAAGGTATATTTTATTTGCTCTGCTTTGAGCCTAAAACTTGCCATTTTATCTGTTGCTCACATGGCAATAAGCGACTGCTGTCTTTTGATCAGCATTCATAATAATAAGAATTATATAATCATTTTATTACTGCAATGTTTTTCACAAAGAAATTGTTATTTATTTTTGTGCACTCTTATTGCATTCTTGCAAGCAGAATAGGACTTTATGTATAGAAATAGGCATATAGAGATTTTGATGTTAAAGATATCGATTTATTCTTTTGAGCTGTAAGCATGTTTGTTATTATTTCAAGTACTGAAAACATTTGTTATTAAAGTGGGTGGTGGAG

Network for GWHGAAEX015810

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	1	137	1.10E-15
PF01061.23	ABC2_membrane	283	496	2.00E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.300
SRP064423	SRR2545915	Juvenile tuber	3.320
SRP108465	SRR5643513	five period of Gastrodia elata	2.260
	SRR5643514	five period of Gastrodia elata	2.470
	SRR5643515	five period of Gastrodia elata	1.920
	SRR5643524	five period of Gastrodia elata	1.420
	SRR5643525	five period of Gastrodia elata	1.720
	SRR5643528	five period of Gastrodia elata	0.790
	SRR5643658	five period of Gastrodia elata	2.630
	SRR5643659	five period of Gastrodia elata	5.290
	SRR5643660	five period of Gastrodia elata	5.100
	SRR5643661	five period of Gastrodia elata	4.490
	SRR5643662	five period of Gastrodia elata	3.110
	SRR5643663	five period of Gastrodia elata	4.750
	SRR5643664	five period of Gastrodia elata	4.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.020
SRP279888	Gastro	Gastrodia elata tuber	4.89
	Juven	Juvenile tuber	4.44
	Mother_Gastro	Mother tuber of Gastrodia elata	3.90
	Mother_Juven	Mother tuber of Juvenile	3.02