Detail information of GWHGAAEX015812/evm.TU.scaffold_7.279
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430762529|ref|YP_007218386.1| | 0 | NAD-dependent malic enzyme [Thioalkalivibrio nitratireducens DSM 14787] |
| KOG | KOG1257 | 0 | NADP+-dependent malic enzyme |
| nr | gi|743756147|ref|XP_010915357.1| | 0 | PREDICTED: NADP-dependent malic enzyme isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P51615|MAOX_VITVI | 0 | NADP-dependent malic enzyme |
| trEMBL | tr|U5D173|U5D173_AMBTC | 0 | Malic enzyme {ECO:0000256|RuleBase:RU003426} |
| TAIR | AT5G25880 | 0 | NADP-malic enzyme 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000005 | 11560215 | 11608506 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015812
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00390.18 | malic | 193 | 373 | 1.30E-78 |
| PF03949.14 | Malic_M | 384 | 638 | 1.10E-99 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0051287 | Molecular Function | NAD binding |
| GO:0004470 | Molecular Function | malic enzyme activity |
| GO:0004471 | Molecular Function | malate dehydrogenase (decarboxylating) (NAD+) activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 424.740 |
| SRR2545915 | Juvenile tuber | 410.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 154.750 |
| SRR5643514 | five period of Gastrodia elata | 99.510 | |
| SRR5643515 | five period of Gastrodia elata | 117.780 | |
| SRR5643524 | five period of Gastrodia elata | 99.460 | |
| SRR5643525 | five period of Gastrodia elata | 175.960 | |
| SRR5643528 | five period of Gastrodia elata | 191.020 | |
| SRR5643658 | five period of Gastrodia elata | 256.780 | |
| SRR5643659 | five period of Gastrodia elata | 138.750 | |
| SRR5643660 | five period of Gastrodia elata | 208.310 | |
| SRR5643661 | five period of Gastrodia elata | 179.950 | |
| SRR5643662 | five period of Gastrodia elata | 136.300 | |
| SRR5643663 | five period of Gastrodia elata | 131.190 | |
| SRR5643664 | five period of Gastrodia elata | 167.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 235.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 163.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 165.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 307.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 289.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 327.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 238.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 255.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 151.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 181.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 128.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 128.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 221.72 |
| Juven | Juvenile tuber | 131.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 135.01 | |
| Mother_Juven | Mother tuber of Juvenile | 214.24 |